Article

Cullen, Merissa G. and Bliss, Liam and Stanley, Dara A. and Carolan, James C. (2023) Investigating the effects of glyphosate on the bumblebee proteome and microbiota. Science of The Total Environment, 864 (161074). pp. 1-16. ISSN 0048-9697

Lillis, Peter E. and Kennedy, Ian P. and Carolan, James C. and Griffin, Christine T. (2023) Low-temperature exposure has immediate and lasting effects on the stress tolerance, chemotaxis and proteome of entomopathogenic nematodes. Parasitology, 150 (1). pp. 15-28. ISSN 0031-1820

López-Ballesteros, Ana and Delaney, Aoife and Quirke, James and Stout, Jane C. and Saunders, Matthew and Carolan, James C. and White, Blánaid and Stanley, Dara A. (2022) Assessing availability of European plant protection product data: an example evaluating basic area treated. PeerJ, 10. e13586. ISSN 2167-8359

Margalit, Anatte and Sheehan, David and Carolan, James C. and Kavanagh, Kevin (2022) Exposure to the Pseudomonas aeruginosa secretome alters the proteome and secondary metabolite production of Aspergillus fumigatus. Microbiology, 168 (3). ISSN 1350-0872

Margalit, Anatte and Carolan, James C. and Walsh, Fiona (2022) Global protein responses of multidrug resistance plasmid-containing Escherichia coli to ampicillin, cefotaxime, imipenem and ciprofloxacin. Journal of Global Antimicrobial Resistance, 28. pp. 90-96. ISSN 22137165

Margalit, Anatte and Carolan, James C. and Walsh, Fiona (2022) Global protein responses of multidrug resistance plasmid-containing Escherichia coli to ampicillin, cefotaxime, imipenem and ciprofloxacin. Journal of Global Antimicrobial Resistance, 28. pp. 90-96. ISSN 22137165

Tissenbaum, Heidi A. and Lillis, Peter E. and Griffin, Christine T. and Carolan, James C. (2022) The effect of temperature conditioning (9°C and 20°C) on the proteome of entomopathogenic nematode infective juveniles. PLOS ONE, 17 (4). e0266164. ISSN 1932-6203

Margalit, Anatte and Carolan, James C. and Kavanagh, Kevin (2021) Bacterial Interactions with Aspergillus fumigatus in the Immunocompromised Lung. Microorganisms, 9 (2). p. 435. ISSN 2076-2607

Byrne, Stephen and Schughart, Maximilian and Carolan, James C. and Gaffney, Michael and Thorpe, Peter and Malloch, Gaynor and Wilkinson, Tom and McNamara, Louise and Scofield, S (2021) Genome sequence of the English grain aphid, Sitobion avenae and its endosymbiont Buchnera aphidicola. G3 Genes|Genomes|Genetics, 12 (3). pp. 1-8. ISSN 2160-1836

Vickneswaran, Mathavan and Carolan, James C. and White, Blánaid (2021) Simultaneous determination of pesticides from soils: a comparison between QuEChERS extraction and Dutch mini-Luke extraction methods. Analytical Methods, 13 (46). pp. 5638-5650. ISSN 1759-9660

Margalit, Anatte and Carolan, James C. and Sheehan, David and Kavanagh, Kevin (2020) The Aspergillus fumigatus Secretome Alters the Proteome of Pseudomonas aeruginosa to Stimulate Bacterial Growth: Implications for Co-infection. Molecular and Cellular Proteomics (MCP), 19 (8). pp. 1346-1359. ISSN 1535-9476

Margalit, Anatte and Kavanagh, Kevin and Carolan, James C. (2020) Characterization of the proteomic response of A549 cells following sequential exposure to Aspergillus fumigatus and Pseudomonas aeruginosa. Journal of Proteome Research, 19. pp. 279-291. ISSN 1535-3893

Colgan, Thomas J. and Carolan, James C. and Sumner, Seirian and Blaxter, Mark L. and Brown, Mark J.F. (2020) Infection by the castrating parasitic nematode Sphaerularia bombi changes gene expression in Bombus terrestris bumblebee queens. Insect Molecular Biology, 29 (2). pp. 170-182. ISSN 0962-1075

Coughlan, Patricia and Carolan, James C. and Hook, Ingrid L.I. and Kilmartin, Lisa and Hodkinson, Trevor R. (2020) Phylogenetics of Taxus Using the Internal Transcribed Spacers of Nuclear Ribosomal DNA and Plastid trnL-F Regions. Horticulturae, 6 (1). pp. 1-16. ISSN 2311-7524

Coughlan, Patricia and Carolan, James C. and Hook, Ingrid and Kilmartin, Lisa and Hodkinson, Trevor (2020) Phylogenetics of Taxus Using the Internal Transcribed Spacers of Nuclear Ribosomal DNA and Plastid trnL-F Regions. Horticulturae, 6 (1). p. 19. ISSN 2311-7524

Green, Dannielle S. and Colgan, Thomas J. and Thompson, Richard C. and Carolan, James C. (2019) Exposure to microplastics reduces attachment strength and alters the haemolymph proteome of blue mussels (Mytilus edulis). Environmental Pollution, 246. pp. 423-434. ISSN 1873-6424

Cullen, Merissa and Thompson, Linzi J. and Carolan, James C. and Stout, Jane C. and Stanley, Dara A. (2019) Fungicides, herbicides and bees: A systematic review of existing research and methods. PLoS ONE, 14 (12). e0225743. ISSN 1932-6203

Colgan, Thomas J. and Finlay, Sive and Brown, Mark J.F. and Carolan, James C. (2019) Mating precedes selective immune priming which is maintained throughout bumblebee queen diapause. BMC Genomics, 20 (959). ISSN 1471-2164

Mangan, Rosie and Carolan, James C. and Baars, Jan-Robert (2019) Molecular characterization of Hydrellia lagarosiphon, a leaf mining biological control agent for Lagarosiphon major, reveals weak variance across large geographic areas in South Africa. Biological Control, 132. pp. 8-15. ISSN 1049-9644

Deslyper, Gwendoline and Holland, Celia V. and Colgan, Thomas J. and Carolan, James C. (2019) The liver proteome in a mouse model for Ascaris suum resistance and susceptibility: evidence for an altered innate immune response. Parasites & Vectors, 12 (402). ISSN 1756-3305

Deslyper, Gwendoline and Doherty, Derek G. and Carolan, James C. and Holland, Celia V. (2019) The role of the liver in the migration of parasites of global significance. Parasites & Vectors, 12 (531). ISSN 1756-3305

Eitle, Markus Walter and Carolan, James C. and Griesser, Michaela and Forneck, Astrid (2019) The salivary gland proteome of root-galling grape phylloxera (Daktulosphaira vitifoliae Fitch) feeding on Vitis spp. PLoS ONE, 14 (12). e0225881. ISSN 1932-6203

Prŷs-Jones, Oliver E and Williams, Paul H. and Carolan, James C. (2018) Bumblebees of the Azores (Apidae: Bombus). Journal of Natural History, 52 (5-6). pp. 345-349. ISSN 0022-2933

Boulain, Hélène and Legeai, Fabrice and Guy, Endrick and Morlière, Stéphanie and Douglas, Nadine E. and Oh, Jonghee and Murugan, Marimuthu and Smith, Michael and Jaquiéry, Julie and Peccoud, Jean and White, Frank F. and Carolan, James C. and Simon, Jean-Christophe and Sugio, Akiko (2018) Fast Evolution and Lineage-Specific Gene Family Expansions of Aphid Salivary Effectors Driven by Interactions with Host-Plants. Genome Biology and Evolution, 10 (6). pp. 1554-1572. ISSN 1759-6653

Surlis, Carla and Carolan, James C. and Coffey, Mary F. and Kavanagh, Kevin (2018) Quantitative proteomics reveals divergent responses in Apis mellifera worker and drone pupae to parasitization by Varroa destructor. Journal of Insect Physiology, 107. pp. 291-301. ISSN 0022-1910

McNamara, Louise and Griffin, Christine and Fitzpatrick, David A. and Kavanagh, Kevin and Carolan, James C. (2018) The effect of entomopathogenic fungal culture filtrate on the immune response and haemolymph proteome of the large pine weevil, Hylobius abietis. Insect Biochemistry and Molecular Biology, 101. pp. 1-13. ISSN 0965-1748

McNamara, Louise and Carolan, James C. and Griffin, Christine and Fitzpatrick, David A. and Kavanagh, Kevin (2017) The effect of entomopathogenic fungal culture filtrate on the immune response of the greater wax moth, Galleria mellonella. Journal of Insect Physiology, 100. pp. 82-92. ISSN 0022-1910

Deslyper, Gwendoline and Colgan, Thomas J. and Cooper, Andrew J.R. and Holland, Celia V. and Carolan, James C. (2016) A Proteomic Investigation of Hepatic Resistance to Ascaris in a Murine Model. PLoS Neglected Tropical Diseases, 10 (8). ISSN 1935-2727

Surlis, Carla and Carolan, James C. and Coffey, Mary F. and Kavanagh, Kevin (2016) Proteomic analysis of Bayvarol® resistance mechanisms in the honey bee parasite Varroa destructor. Journal of Apicultural Research, 55 (1). pp. 49-64. ISSN 2078-6913

Zhao, Chaoyang and Escalante, Lucio Navarro and Chen, Hang and Benatti, Thiago R. and Qu, Jiaxin and Chellapilla, Sanjay and Waterhouse, Robert M. and Wheeler, David and Andersson, Martin N. and Bao, Riyue and Batterton, Matthew and Behura, Susanta K. and Blankenburg, Kerstin P. and Caragea, Doina and Carolan, James C. and Coyle, Marcus and El-Bouhssini, Mustapha and Francisco, Liezl and Friedrich, Markus and Gill, Navdeep and Grace, Tony and Grimmelikhuijzen, Cornelis J.P. and Han, Yi and Hauser, Frank and Herndon, Nicolae and Holder, Michael and Ioannidis, Panagiotis and Jackson, LaRonda and Javaid, Mehwish and Jhangiani, Shalini N. and Johnson, Alisha J. and Kalra, Divya and Korchina, Viktoriya and Kovar, Christie and Lara, Fremiet and Lee, Sandra L. and Liu, Xuming and Löfstedt, Christer and Mata, Robert and Mathew, Tittu and Muzny, Donna M. and Nagar, Swapnil and Nazareth, Lynne V. and Okwuonu, Geoffrey and Ongeri, Fiona and Perales, Lora and Peterson, Brittany F. and Pu, Ling-Ling and Robertson, Hugh M. and Schemerhorn, Brandon J. and Scherer, Steven E. and Shreve, Jacob T. and Simmons, DeNard and Subramanyam, Subhashree and Thornton, Rebecca and Xue, Kun and Weissenberger, George M. and Williams, Christie E. and Worley, Kim C. and Zhu, Dianhui and Zhu, Yiming and Harris, Marion O. and Shukle, Richard H. and Weren, John H. and Zdobnov, Evgeny M. and Chen, Ming-Shun and Brown, Susan J. and Stuart, Jeffery J. and Richards, Stephen (2015) A Massive Expansion of Effector Genes Underlies Gall-Formation in the Wheat Pest Mayetiola destructor. Current Biology, 25. pp. 613-620. ISSN 0960-9822

Browne, Niall and Surlis, Carla and Maher, Amie and Gallagher, Clair and Carolan, James C. and Clynes, Martin and Kavanagh, Kevin (2015) Prolonged pre-incubation increases the susceptibility of Galleria mellonella larvae to bacterial and fungal infection. Virulence, 6 (5). pp. 458-465. ISSN 2150-5594

Scriven, Jessica J. and Woodall, Lucy C. and Tinsley, Matthew C. and Knight, Mairi E. and Williams, Paul H. and Carolan, James C. and Brown, Mark J.F. and Goulson, Dave (2015) Revealing the hidden niches of cryptic bumblebees in Great Britain: Implications for conservation. Biological Conservation, 182. pp. 126-133. ISSN 0006-3207

Barribeau, Seth M. and Sadd, Ben M. and du Plessis, Louis and Brown, Mark J.F. and Buechel, Severine D. and Chappelle, Kaat and Carolan, James C. and Christiaens, Oliver and Colgan, Thomas J. and Erler, Silvio and Evans, Jay and Helbing, Sophie and Karaus, Elke and Lattorff, H. Michael and Marxer, Monica and Meeus, Ivan and Näpflin, Kathrin and Niu, Jinzhi and Schmid-Hempe, Regula and Smagghe, Guy and Waterhouse, Robert M. and Yu, Na and Zdobnov, Evgeny and Schmid-Hempel, Paul (2015) A depauperate immune repertoire precedes evolution of sociality in bees. Genome Biology, 16 (83). pp. 1-20. ISSN 1465-6906

Sadd, Ben M. and Barribeau, Seth M. and Bloch, Guy and de Graaf, Dirk C. and Dearden, Peter and Elsik, Christine G. and Gadau, Jürgen and Grimmelikhuijzen, Cornelis J.P. and Hasselmann, Martin and Lozier, Jeffrey D. and Robertson, Hugh M. and Smagghe, Guy and Stolle, Eckart and Van Vaerenbergh, Matthias and Waterhouse, Robert M. and Bornberg-Bauer, Erich and Klasberg, Steffen and Bennett, Anna K. and Câmara, Francisco and Guigó, Roderic and Hoff, Katharina and Mariotti, Marco and Munoz-Torres, Monica and Murphy, Terence and Santesmasses, Didac and Amdam, Gro V. and Beckers, Matthew and Beye, Martin and Biewer, Matthias and Bitondi, Márcia M.G. and Blaxter, Mark L. and Bourke, Andrew F.G. and Brown, Mark J.F. and Buechel, Severine D. and Cameron, Rossanah and Cappelle, Kaat and Carolan, James C. and Christiaens, Olivier and Ciborowski, Kate L. and Clarke, David F. and Colgan, Thomas J. and Collins, David H. and Cridge, Andrew G. and Dalmay, Tamas and Dreier, Stephanie and du Plessis, Louis and Duncan, Elizabeth and Erler, Silvio and Evans, Jay and Falcon, Tiago and Flores, Kevin and Freites, Flávia C.P. and Fuchikawa, Taro and Gempe, Tanja and Hartfelder, Klaus and Hauser, Frank and Helbing, Sophie and Humann, Fernanda C. and Irvine, Frano and Jermiin, Lars S. and Johnson, Claire E. and Johnson, Reed M. and Jones, Andrew K. and Kadowaki, Tatsuhiko and Kidner, Jonathan H. and Koch, Vasco and Köhler, Arian and Kraus, F. Bernhard and Lattorff, H. Michael and Leask, Megan and Lockett, Gabrielle A. and Mallon, Eamonn B. and Marco Antonio, David S. and Marxer, Monica and Meeus, Ivan and Moritz, Robin F.A. and Nair, Ajay and Näpflin, Kathrin and Nissen, Inga and Niu, Jinzhi and Nunes, Francis M.F. and Oakeshott, John G. and Osborne, Amy and Otte, Marianne and Pinheiro, Daniel and Rossié, Nina and Rueppell, Olav and Santos, Carolina G. and Schmid-Hempel, Regula and Schmitt, Björn D. and Scheulte, Christina and Simões, Zilá L.P. and Soares, Michelle P.M. and Swevers, Luc and Winnebeck, Eva C. and Wolschin, Florian and Yu, Na and Zdobnov, Evgeny M. and Aqrawi, Peshtewani K. and Blankenburg, Kerstin P. and Coyle, Marcus and Francisco, Liezl and Hernandez, Alvaro G. and Holder, Michael and Hudson, Matthew E. and Jackson, LaRonda and Jayaseelan, Joy and Joshi, Vandita and Kovar, Christie and Lee, Sandra L. and Mata, Robert and Mathew, Tittu and Newsham, Irene F. and Ngo, Robert and Okwuonu, Geoffrey and Pham, Christopher and Pu, Ling-Ling and Saada, Nehad and Santibanez, Jireh and Simmons, DeNard and Thornton, Rebecca and Venkat, Aarti and Walden, Kimberley K.O. and Wu, Yuan-Qing and Debyser, Griet and Devreese, Bart and Asher, Claire and Blommaert, Julie and Chipman, Ariel D. and Chittka, Lars and Fouks, Bertrand and Liu, Jisheng and O'Neill, Meaghan P. and Sumner, Seirian and Puiu, Daniela and Qu, Jiaxin and Salzberg, Steven L. and Scherer, Steven E. and Muzny, Donna M. and Richards, Stephen and Robinson, Gene E. and Gibbs, Richard A. and Schmid-Hempel, Paul and Worley, Kim C. (2015) The genomes of two key bumblebee species with primitive eusocial organization. Genome Biology, 16 (76). pp. 1-31. ISSN 1465-6906

Rao, Sohail Ahmad Khan and Carolan, James C. and Wilkinson, Thomas L. (2013) Proteomic Profiling of Cereal Aphid Saliva Reveals Both Ubiquitous and Adaptive Secreted Proteins. PLoS ONE, 8 (2). e57413. ISSN 1932-6203

Carolan, James C. and Murray, Tomas E. and Fitzpatrick, Una and Crossley, John and Schmidt, Hans and Cederberg, Bjorn and McNally, Luke and Paxton, Robert J. and Williams, Paul H. and Brown, Mark J.F. (2012) Colour Patterns Do Not Diagnose Species: Quantitative Evaluation of a DNA Barcoded Cryptic Bumblebee Complex. PLoS ONE, 7 (1). e29251. ISSN 1932-6203

Williams, Paul H. and An, Jiandong and Brown, Mark J.F. and Carolan, James C. and Goulson, Dave and Huang, Jiaxing and Ito, Masao (2012) Cryptic Bumblebee Species: Consequences for Conservation and the Trade in Greenhouse Pollinators. PLoS ONE, 7 (3). e32992. ISSN 1932-6203

Williams, Paul H. and Brown, Mark J.F. and Carolan, James C. and An, Jiandong and Goulson, Dave and Aytekin, A. Murat and Best, Lincoln R. and Byvaltsev, Alexandr M. and Cederberg, Bjorn and Dawson, Robert and Huang, Jiaxing and Ito, Masao and Monfared, Alireza and Raina, Rifat H. and Schmid-Hempel, Paul and Sheffield, Cory S. and Šima, Peter and Xie, Zenghua (2012) Unveiling cryptic species of the bumblebee subgenus Bombus s. str. worldwide with COI barcodes (Hymenoptera: Apidae). Systematics and Biodiversity, 10 (1). pp. 21-56. ISSN 1477-2000

Williams, Paul H. and Brown, Mark J.F. and Carolan, James C. and An, Jiandong and Goulson, Dave and Aytekin, A. Murat and Best, Lincoln R. and Byvaltsev, Alexandr M. and Cederberg, Bjorn and Dawson, Robert and Huang, Jiaxing and Ito, Masao and Monfared, Alireza and Raina, Rifat H. and Schmid-Hempel, Paul and Sheffield, Cory S. and Šima, Peter and Xie, Zenghua (2012) Unveiling cryptic species of the bumblebee subgenus Bombus s. str. worldwide with COI barcodes (Hymenoptera: Apidae). Systematics and Biodiversity, 10 (1). pp. 21-56. ISSN 1477-2000

Colgan, Thomas J. and Carolan, James C. and Bridgett, Stephen J. and Sumner, Seirian and Blaxter, Mark L. and Brown, Mark J.F. (2011) Polyphenism in social insects: insights from a transcriptome-wide analysis of gene expression in the life stages of the key pollinator, Bombus terrestris. BMC Genomics, 12 (623). pp. 1-20. ISSN 1471-2164

Carolan, James C. and Caragea, Doina and Reardon, Karen T. and Mutti, Navdeep S. and Dittmer, Neal and Pappan, Kirk and Cui, Feng and Castaneto, Marisol and Poulain, Julie and Dossat, Carole and Tagu, Denis and Reese, John C. and Reeck, Gerald R. and Wilkinson, Thomas L. and Edwards, Owain R. (2011) Predicted Effector Molecules in the Salivary Secretome of the Pea Aphid (Acyrthosiphon pisum): A Dual Transcriptomic/Proteomic Approach. Journal of Proteome Research, 10 (4). pp. 1505-1518. ISSN 1535-3893

Gibbs, Richard A. and Kovar, Christie and Fowler, Gerald R. and Nazareth, Lynne V. and Atsushi, Nakabachi and Worley, Kim C. and Tagu, Denis and Richards, Stephen and Gabaldon, Toni and Rispe, Claude and Quesneville, Hadi and Douglas, Angela and Shigenobu, Shuji and Moran, Nancy and Barribeau, Seth M. and Gerardo, Nichole M. and Ghanim, Murad and Chang, Chun-che and Davis, Gregory K. and Rider Jr., Stanley Dean and Walsh, Thomas K. and Brisson, Jennifer A. and Miura, Toru and Srinivasan, Dayalan and Willson, Alex C.C. and Jaubert-Possamai, Stephanie and Robertson, Hugh M. and Field, Linda M. and Jander, Georg and Carolan, James C. and Edwards, Owain R. and Tamborindeguy, Cecilia and Martinez-Torres, David and Dale, Richard P. and Charles, Hubert (2010) Genome Sequence of the Pea Aphid Acyrthosiphon pisum. PLoS Biology, 8 (2). e1000313. ISSN 1545-7885

Wang, Yulang and Carolan, James C. and Hao, FuHua and Nicholson, Jeremy K. and Wilkinson, Thomas L. and Douglas, Angela E. (2010) Integrated Metabonomic-Proteomic Analysis of an Insect-Bacterial Symbiotic System. Journal of Proteome Research, 9 (3). pp. 1257-1267. ISSN 1535-3893

Nic An Ultaigh, Sinéad and Carolan, James C. and Britton, Collette and Murray, Linda and Ryan, Michael F. (2009) A cathepsin L-like protease from Strongylus vulgaris: An orthologue of Caenorhabditis elegans CPL-1. Experimental Parasitology, 121 (4). pp. 293-299. ISSN 0014-4894

Carolan, James C. and Fitzroy, Carol I.J. and Ashton, Peter D. and Douglas, Angela E. and Wilkinson, Thomas L. (2009) The secreted salivary proteome of the pea aphid Acyrthosiphon pisum characterised by mass spectrometry. Proteomics, 9 (9). pp. 2457-2467. ISSN 1615-9853

Carolan, James C. and Hook, Ingrid L.I. and Chanse, Mark W. and Kadereit, Joachim W. and Hodkinson, Trevor R. (2006) Phylogenetics of Papaver and Related Genera Based on DNA Sequences from ITS Nuclear Ribosomal DNA and Plastid trnL Intron and trnL–F Intergenic Spacers. Annals of Botany, 98 (1). pp. 141-155. ISSN 0305-7364

Carolan, James C. and Hook, Ingrid L.I. and Walsh, J.J. and Hodkinson, Trevor R. (2002) Using AFLP Markers for Species Differentiation and Assessment of Genetic Variability of in Vitro-Cultured Papaver Bracteatum (Section Oxytona). In Vitro Cellular & Developmental Biology - Plant, 38 (3). pp. 300-307.

Book Section

Rao, Sohail Ahmad Khan and Carolan, James C. and Wilkinson, Thomas L. (2016) Proteomic Insights into the Hidden World of Phloem Sap Feeding. In: Management of Insect Pests to Agriculture. Springer International Publishing, pp. 49-61. ISBN 978-3-319-24047-3

Will, Torsten and Carolan, James C. and Wilkinson, Thomas L. (2012) Breaching the Sieve Element—The Role of Saliva as the Molecular Interface between Aphids and the Phloem. In: Phloem: Molecular Cell Biology, Systemic Communication, Biotic Interactions. Wiley-Blackwell, pp. 310-327. ISBN 9780470958605