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Zachariadis, O. and Cassidy, J.P. and Brady, J. and Mahon, B.P. (2006) T Cells Regulate the Early Inflammatory Response to Bordetella pertussis Infection in the Murine Respiratory Tract. Infection and Immunity, 74. pp. 1837-1845.

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Abraham, K. and Mielke, H. and Huisinga, W. and Gundert-Remy, U. (2005) Internal Exposure of Children by Simulated Acute Inhalation of Volatile Organic Compounds: The Influence of Chemical Properties on the Child/Adult Concentration Ratio. Basic & Clinical Pharmacology & Toxicology (BCPT), 96 (3). pp. 242-243. ISSN 1742-7843

Abraham, Klaus and Mielke, Hans and Huisinga, Wilhelm and Gundert-Remy, Ursula (2005) Elevated Internal Exposure of Children in Simulated Acute Inhalation of Volatile Organic Compounds: Effects of Concentration and Duration. Archives of Toxicology, 79 (2). pp. 63-73. ISSN 1432-0738

Abuskhuna, A. and Briody, J.M. and McCann, M. and Devereux, M. and Kavanagh, K.A. and Fontecha, J.B. and McKee, V. (2004) Synthesis, structure and anti-fungal activity of dimeric Ag(I) complexes containing bis-imidazole ligands. Polyhedron, 23. pp. 1249-1255.

Adams, B.J. and Burnell, A.M. and Powers, T.O. (1998) A Phylogenetic Analysis of Heterorhabditis (Nemata :Rhabditidae) Based on Internal Transcribed Spacer 1 DNA Sequence Data. Journal of Nematology, 30 (1). pp. 22-39.

Ahmed, Suaad M. and Maratha, Ashwini and Buttimer, Anne and Shevlin, E. and Miggin, Sinead M. (2013) TRIF-mediated TLR3 and TLR4 signaling is negatively regulated by ADAM15. Journal of Immunology, 190. pp. 2217-2228. ISSN 0022-1767

Akanni, Wasiu (2014) Developing and applying supertree methods in Phylogenomics and Macroevolution. PhD thesis, National University of Ireland Maynooth.

Ansell, Richard J. and Tunon, Pilar Gonzalez and Wang, Yating and Myers, Peter and Ivory, Cornelius F. and Keen, Jeffrey N. and Findlay, John B. C. (2009) Electrophoretic field gradient focusing with on-column detection by fluorescence quenching. Analyst, 134. pp. 226-229. ISSN 0003-2654

Atzei, Paola and Yang, Fan and Collery, Ross and Kennedy, Breandan N. and Moynagh, Paul N. (2010) Characterisation of expression patterns and functional role of Cactin in early zebrafish development. Gene Expression Patterns, 10 (4/5). pp. 199-206. ISSN 1567-133X

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Banville, Nessa (2011) Characterisation of the G. mellonella cellular innate immune response and a comparison with the human neutrophil. PhD thesis, National University of Ireland Maynooth.

Banville, Nessa and Browne, Niall and Kavanagh, Kevin (2012) Effect of nutrient deprivation on the susceptibility of Galleria mellonella larvae to infection. Virulence, 3 (6). pp. 497-503. ISSN 2150-5594

Banville, Nessa and Fallon, John and McLoughlin, Kirstin and Kavanagh, Kevin (2011) Disruption of haemocyte function by exposure to cytochalasin b or nocodazole increases the susceptibility of Galleria mellonella larvae to infection. Microbes and Infection, 13. pp. 1191-1198. ISSN 1286-4579

Barillot, C. and Coupé, P. and El Ganaoui, O. and Gibaud, B and Hellier, P. and Jannin, P. and Paul, P. and Prima, S. and Wiest-Daesslé, N. and Morandi, X. (2007) Image guidance in neurosurgical procedures, the "Visages" point of view. In: 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro. Proceedings. IEEE, pp. 1056-1059. ISBN 1-4244-0672-2

Bergin, David and Murphy, Lisa and Keenan, Joanne and Clynes, Martin and Kavanagh, Kevin (2006) Pre-exposure to yeast protects larvae of Galleria mellonella from a subsequent lethal infection by Candida albicans and is mediated by the increased expression of antimicrobial peptides. Microbes and Infection. (In Press)

Bergin, David and Reeves, Emer P. and Renwick, Julie and Wientjes, Frans B. and Kavanagh, Kevin (2005) Superoxide Production in Galleria mellonella Hemocytes: Identification of Proteins Homologous to the NADPH Oxidase Complex of Human Neutrophils. Infection and Immunity, 73 (7).

Bergin, David and Reeves, Emer P. and Renwick, Julie and Wientjes, Frans B. and Kavanagh, Kevin (2005) Superoxide Production in Galleria mellonella Hemocytes: Identification of Proteins Homologous to the NADPH Oxidase Complex of Human Neutrophils. Infection and Immunity, 73 (7). pp. 4161-4170.

Browne, John and Tunnacliffe, Alan and Burnell, Ann (2002) Plant desiccation gene found in a nematode. Nature, 416. p. 38.

Browne, John A. and Dolan, Katharine M. and Tyson, Trevor and Goyal, Kshamata and Tunnacliffe, Alan and Burnell, Ann M. (2004) Dehydration-Specific Induction of Hydrophilic Protein Genes in the Anhydrobiotic Nematode Aphelenchus avenae. Eukaryotic Cell, 3 (4). pp. 966-975.

Browne, Niall and Heelan, Michelle and Kavanagh, Kevin (2013) An analysis of the structural and functional similarities of insect hemocytes and mammalian phagocytes. Virulence, 4 (4). pp. 1-7. ISSN 2150-5594

Browne, Niall and Kavanagh, Kevin (2013) Developing the potential of using Galleria mellonella larvae as models for studying brain infection by Listeria monocytogenes. Virulence, 4 (4). pp. 271-272. ISSN 2150-5594

Bruni, Daniela and Sebastia, Jordi and Dunne, Susan and Schroder, Martina and Butler, Marion P. (2013) A Novel IRAK1–IKKԑ Signaling Axis Limits the Activation of TAK1–IKKb Downstream of TLR3. Journal of Immunology, 190. pp. 2844-2856. ISSN 0022-1767

Buckley, Stephen and Mahon, Bernard (2010) Bonus points for maths. The Irish Times, October 12, 2010.

Burnell, Ann M. and Dowds, Barbara C.A. (1996) The Genetic Improvement of Entomopathogenic Nematodes and Their Symbiont Bacteria: Phenotypic Targets, Genetic Limitations and an Assessment of Possible Hazards. Biocontrol Science and Technology, 6. pp. 435-447.

Burnell, Ann M. and Houthoofd, Koen and O'Hanlon, Karen and Vanfleteren, Jacques R. (2005) Alternate metabolism during the dauer stage of the nematode Caenorhabditis elegans. Experimental Gerontology, 40. pp. 850-856.

Burnell, Ann M. and O'Halloran, Damien M. (2004) Chemoreceptor genes: what can we learn from Caenorhabditis elegans and how can we apply this information to studies on other nematodes? Nematology Monographs & Perspectives, 2. pp. 707-714.

Burnell, Ann M. and Stock, S. Patricia (2000) Heterorhabditis, Steinernema and their bacterial symbionts - lethal pathogens of insects. Nematology, 2 (1). pp. 31-42.

Burns, Claire and Geraghty, Rachel and Neville, Claire and Murphy, Alan and Kavanagh, Kevin and Doyle, Sean (2005) Identification, cloning, and functional expression of three glutathione transferase genes from Aspergillus fumigatus. Fungal Genetics and Biology, 42 (4). pp. 319-327.

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Caboni, Laura and Kinsella, Gemma K. and Blanco, Fernando and Fayne, Darren and Jagoe, William M. and Carr, Miriam and Williams, D. Clive and Meegan, Mary J. and Lloyd, David G. (2012) “True” Antiandrogens : Selective Non-Ligand-Binding Pocket Disruptors of Androgen Receptor−Coactivator Interactions: Novel Tools for Prostate Cancer. Journal of Medicinal Chemistry, 55. pp. 1635-1644. ISSN 0022-2623

Cahill, Emer (2014) The Role of Mesenchymal Stromal Cells in Inflammation and Treatment of Pulmonary Fibrosis. PhD thesis, National University of Ireland Maynooth.

Campbell, Lahcen I. (2012) A cause for consilience: Utilizing multiple genomic data types to resolve problematic nodes within Arthropoda and Ecdysozoa. PhD thesis, National University of Ireland Maynooth.

Campos-Sandoval, Jose Angel and Redondo, Clara and Kinsella, Gemma K. and Pal, Akos and Jones, Geraint and Eyre, Gwen S. and Hirst, Simon C, and Findlay, John B. C. (2011) Fenretinide Derivatives Act as Disrupters of Interactions of Serum Retinol Binding Protein (sRBP) with Transthyretin and the sRBP Receptor. Journal of Medicinal Chemistry, 54. pp. 4378-4387. ISSN 0022-2623

Canavan, Mary and McCarthy, Ciara and Ben Larbi, Nadia and Dowling, Jennifer and Collins, Laura and O'Sullivan, Finbarr and Hurley, Grainne and Murphy, Carola and Quinlan, Aoife and Moloney, Gerry and Darby, Trevor and MacSharry, John and Kagechika, Hiroyuki and Moynagh, Paul N. and Melgar, Silvia and Loscher, Christine E. (2013) Activation of liver X receptor suppresses the production of the IL-12 family of cytokines by blocking nuclear translocation of NF-kBp50. Innate Immunity. ISSN 1753-4259

Carberry, Stephen and Doyle, Sean (2007) Proteomic studies in biomedically and industrially relevant fungi. Cytotechnology, 53 (1-3). pp. 95-100. ISSN 0920-9069

Carberry, Stephen and Molloy, Emer and Hammel, Stephen and O'Keefe, Grainne and Jones, Gary W and Kavanagh, Kevin and Doyle, Sean (2012) Gliotoxin effects on fungal growth: Mechanisms and exploitation. Fungal Genetics and Biology, 49 (4). pp. 302-312. ISSN 1087-1845

Carberry, Stephen and Neville, Claire M. and Kavanagh, Kevin A. and Doyle, Sean (2006) Analysis of major intracellular proteins of Aspergillus fumigatus by MALDI mass spectrometry: Identification and characterisation of an elongation factor 1B protein with glutathione transferase activity. Biochemical and Biophysical Research Communications, 341. pp. 1096-1104.

Carberry, Steven (2014) Proteomic Profiling of the mdx Animal Model for Duchenne Muscular Dystrophy. PhD thesis, National University of Ireland Maynooth.

Carolan, James C. and Murray, Tomas E. and Fitzpatrick, Una and Crossley, John and Schmidt, Hans and Cederberg, Bjorn and McNally, Luke and Paxton, Robert J. and Williams, Paul H. and Brown, Mark J. F. (2012) Colour Patterns Do Not Diagnose Species: Quantitative Evaluation of a DNA Barcoded Cryptic Bumblebee Complex. PLoS ONE, 7 (1). e29251. ISSN 1932-6203

Carr, Derek P. (2012) Assessment of alternative uses for lignocellulosic waste products. PhD thesis, National University of Ireland Maynooth.

Carr, Michael J. and McCormack, Grace P. and Crowley, Brendan (2004) Genetic Variation in Clinical Varicella-Zoster Virus Isolates Collected in Ireland Between 2002 and 2003. Journal of Medical Virology, 73 (1). pp. 131-136.

Casey, D.G. and Burnell, A.M. (2001) The isolation of microsatellite loci in the Mediterranean fruitfly Ceratitis capitata (Diptera: Tephritidae) using a biotin/streptavidin enrichment technique. Molecular Ecology Notes, 1. pp. 120-122.

Casey, Orla M. and Fitzpatrick, Richard and McInerney, James O. and Morris, Dermot G. and Powell, Richard and Sreenan, Joseph M. (2004) Analysis of gene expression in the bovine corpus luteum through generation and characterisation of 960 ESTs. Biochimica et Biophysica Acta, 1679 (1). pp. 10-17.

Clarke, Michael and Lohan, Amanda and Liu, Bernard and Lagkouvardos, Ilias and Roy, Scott and Zafar, Nikhat and Bertelli, Claire and Schilde, Christina and Kianianmomeni, Arash and Burglin, Thomas R. and Frech, Christian and Turcotte, Bernard and Kopec, Klaus O. and Synnott, John M. and Choo, Caleb and Paponov, Ivan and Finkler, Aliza and Soon Heng Tan, Chris and Hutchins, Andrew P. and Weinmeier, Thomas and Ratteri, Thomas and Chu, Jeffery SC and Gimenez, Gregory and Irimia, Manuel and Rigden, Daniel J. and Fitzpatrick, David A. and Lorenzo-Morales, Jacob and Baterman, Alex and Chiu, Cheng-Hsun and Tang, Petrus and Hegemann, Peter and Fromm, Hillel and Raoult, Didier and Greub, Gilbert and Miranda-Saavedra, Diego and Chen, Nansheng and Nash, Piers and Ginger, Michael L. and Horn, Matthias and Schaap, Pauline and Caler, Lis and Loftus, Brendan J. (2013) Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling. Genome Biology, 14 (R11). ISSN 1465-6906

Colgan, Thomas J. and Carolan, James C. and Bridgett, Stephen J. and Sumner, Seirian and Blaxter, Mark L. and Brown, Mark J.F. (2011) Polyphenism in social insects: insights from a transcriptome-wide analysis of gene expression in the life stages of the key pollinator, Bombus terrestris. BMC Genomics, 12 (623). pp. 1-20. ISSN 1471-2164

Collins, Cassandra (2013) A Genomic and Proteomic Investigation of the Plant Pathogen Armillaria mellea: Buried Treasure or Hidden Threat? PhD thesis, National University of Ireland Maynooth.

Collins, Peter R. and Stack, Colin M. and O'Neill, Sandra M. and Doyle, Sean and Ryan, Thecla and Brennan, Gerard P. and Mousley, Angela and Stewart, Michael and Maule, Aaron G. and Dalton, John P. and Donnelly, Sheila (2004) Cathepsin L1, the Major Protease Involved in Liver Fluke (Fasciola hepatica) Virulence. Journal of Biological Chemistry, 279 (17). pp. 17038-17046.

Cooney, David (2011) Possible Interacting Proteins for Retinol Binding Protein and Cellular Retinol Binding Protein. Masters thesis, National University of Ireland Maynooth.

Corcoran, A. and Crowley, B. and Dewhurst, C. and Pizer, B.L. and Doyle, S. (2006) Establishment of Functional B Cell Memory Against Parvovirus B19 Capsid Proteins May be Associated With Resolution of Persistent Infection. Journal of Medical Virology, 78. pp. 125-128.

Corcoran, A. and Doyle, S. and Allain, J.P. and Candotti, D. and Parsyan, A. (2005) Letter to the Editor Evidence of Serological Cross-Reactivity between Genotype 1 and Genotype 3 Erythrovirus Infections. Journal of Virology, 79 (8). pp. 5238-5239.

Corcoran, A. and Doyle, Sean (2006) Human Parvovirus B19: Molecular Virology, Clinical Features, Prevalence, Diagnosis and Control. In: UNSPECIFIED Elsevier, pp. 173-209.

Corcoran, Amanda and Mahon, Bernard P. and Doyle, Sean (2004) B Cell Memory Is Directed toward Conformational Epitopes of Parvovirus B19 Capsid Proteins and the Unique Region of VP1. Journal of Infectious Diseases, 189 (10). pp. 1873-1880.

Costello, Anne and Herbert, Gillian and Fabunmi, Lydia and Schaffer, Kirsten and Kavanagh, Kevin A. and Caraher, Emma M. and Callaghan, Maire and McClean, Siobhan (2011) Virulence of an emerging respiratory pathogen, genus Pandoraea, in vivo and its interactions with lung epithelial cells. Journal of Medical Microbiology, 60 (3). pp. 289-299. ISSN 0022-2615

Cotton, James A. and McInerney, James O. (2010) Eukaryotic genes of archaebacterial origin are more important than the more numerous eubacterial genes, irrespective of function. Proceedings of the National Academy of Sciences , 107 (40). pp. 17252-17255. ISSN 1091-6490

Coyle, Barry and Kinsella, Paula and McCann, Malachy and Devereux, Michael and O'Connor, Robert and Clynes, Martin and Kavanagh, Kevin (2004) Induction of apoptosis in yeast and mammalian cells by exposure to 1,10-phenanthroline metal complexes. Toxicology in Vitro, 18 (1). pp. 63-70.

Creaven, Bernadette and Egan, Denise and Kavanagh, Kevin and McCann, Malachy and Noble, Andy and Thati, Bhumika and Walsh, Maureen (2006) Synthesis, characterization and antimicrobial activity of a series of substituted coumarin-3-carboxylatosilver(1) complexes. Inorganica Chimica Acta, 359 (12). pp. 3976-3984.

Creaven, Bernadette S. and Duff, Brian and Egan, Denise A. and Kavanagh, Kevin and Rosair, Georgina and Reddy Thangellaa, Venkat and Walsh, Maureen (2010) Anticancer and antifungal activity of copper(II) complexes of quinolin-2(1H)-one-derived Schiff bases. Inorganica Chimica Acta, 363 (14). pp. 4048-4058. ISSN 0020-1693

Creaven, Bernadette S. and Egan, Denise A. and Kavanagh, Kevin and McCann, Malachy and Noble, Andy and Thati, Bhumika and Walsh, Maureen (2006) Synthesis, characterization and antimicrobial activity of a series of substituted coumarin-3-carboxylatosilver(I) complexes. Inorganica Chimica Acta.

Creevey, C.J. and McInerney, J.O. (2005) Clann: investigating phylogenetic information through supertree analyses. Bioinformatics, 21 (3). pp. 390-392.

Creevey, Christopher J. and Doerks, Tobias and Fitzpatrick, David A. and Raes, Jeroen and Bork, Peer (2011) Universally Distributed Single-Copy Genes Indicate a Constant Rate of Horizontal Transfer. PLoS ONE, 6 (8). ISSN 1932-6203

Creevey, Christopher J. and Fitzpatrick, David A. and Philip, Gayle K. and Kinsella, Rhoda J. and O'Connell, Mary J. and Pentony, Melissa M. and Travers, Simon A. and Wilkinson, Mark and McInerney, James O. (2004) Does a tree-like phylogeny only exist at the tips in the prokaryotes? Proceedings of The Royal Society of London, Biology Series, 271 (1557). pp. 2551-2558.

Cummins, Carla A. (2011) A new method for identifying site-specific evolutionary rates and its applications. PhD thesis, National University of Ireland Maynooth.

Cusack, Sarah (2010) Assessing the role of Hsp70 in prion propagation in Saccharomyces cerevisiae. PhD thesis, National University of Ireland Maynooth.

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Dang, Xiaodong (2012) Application of High Resolution Melting analysis for haplotype detection in phylogeographic research and case studies of Arenaria ciliata, A. norvegica and Minuartia recurva (Caryophyllaceae). PhD thesis, National University of Ireland Maynooth.

Davis, Carol (2011) The Glutathione S-Transferase GliG Mediates Gliotoxin Biosynthesis, not Self-Protection, in Aspergillus fumigatus: A Functional Genomic Investigation. PhD thesis, National University of Ireland Maynooth.

Davis, Carol and Carberry, Stephen and Schrettl, Markus and Singh, Ishwar and Stephens, John C. and Barry, Sarah M. and Kavanagh, Kevin and Challis, Gregory L. and Brougham, Dermot and Doyle, Sean (2011) The Role of Glutathione S-Transferase GliG in Gliotoxin Biosynthesis in Aspergillus fumigatus. Chemistry and Biology, 18. pp. 542-552. ISSN 1074-5521

Davis, Carol and Gordon, Natasha and Murphy, Sinead and Singh, Ishwar and Kavanagh, Kevin and Carberry, Stephen and Doyle, Sean (2011) Single-pot derivatisation strategy for enhanced gliotoxin detection by HPLC and MALDI-ToF mass spectrometry. Analytical and Bioanalytical Chemistry, 401 (8). pp. 2519-2529. ISSN 1618-2642

Dillon, Aoife and Griffin, Christine (2008) Controlling the large pine weevil, Hylobius abietis, using natural enemies. COFORD Connects: Silviculture and Forest Management (15). pp. 1-8.

Dillon, Aoife B. and Foster, Aileen and Williams, Christopher D. and Griffin, Christine T. (2012) Environmental safety of entomopathogenic nematodes – Effects on abundance, diversity and community structure of non-target beetles in a forest ecosystem. Biological Control, 63 (2). pp. 107-114. ISSN 1049-9644

Dillon, Aoife B. and Ward, Declan and Downes, Martin J. and Griffin, Christine T. (2006) Suppression of the large pine weevil Hylobius abietis (L.) (Coleoptera: Curculionidae) in pine stumps by entomopathogenic nematodes with different foraging strategies. Biological Control, 38. pp. 217-226.

Dix, I. and Burnell, A.M. and Griffin, C.T. and Joyce, S.A. and Nugent, M.J. (1992) The identification of biological species in the genus Heterorhabditis (Nematoda : Heterorhabditidae) by cross-breeding second-generation amphimictic adults. Parasitology, 104. pp. 509-518.

Dix, Philip J. and Burbridge, E. and Diamond, M. and McCabe, P.F. (2006) Use of cell morphology to evaluate the effect of a peroxidase gene on cell death induction thresholds in tobacco. Plant Science, 171. pp. 138-146.

Doherty, Aoife (2012) Increased genome sampling reveals novel insights into vertebrate molecular evolution. PhD thesis, National University of Ireland Maynooth.

Doherty, Derek and Arnaiz, Blanca and Madrigal-Estebas, Laura and Todryk, Stephen and James, Tharappel C and Bond, Ursula (2006) A novel method to identify and characterise peptide mimotopes of heat shock protein 70-associated antigens. Journal of Immune Based Therapies and Vaccines, 4 (2). pp. 1-12.

Dolan, K.M. and Jones, J.T. and Burnell, A.M. (2002) Detection of changes occurring during recovery from the dauer stage in Heterorhabditis bacteriophora. Parasitology, 125. pp. 71-81.

Doran, Anthony Gerard (2013) Systems level investigation of the genetic basis of bovine muscle growth and development. PhD thesis, National University of Ireland Maynooth.

Downer, Eric J. and Clifford, Eileen and Amu, Sylvie and Fallon, Padraic G. and Moynagh, Paul N. (2012) The Synthetic Cannabinoid R(+)WIN55,212-2 Augments Interferon-β Expression via Peroxisome Proliferator-activated Receptor-α. Journal of Biological Chemistry, 287 (30). pp. 25440-25453. ISSN 0021-9258

Downer, Eric J. and Clifford, Eileen and Gran, Bruno and Hendrik, J. Nel and Fallon, Padraig G. and Moynagh, Paul N. (2011) Identification of the Synthetic Cannabinoid R()WIN55,212-2 as a Novel Regulator of IFN Regulatory Factor 3 Activation and IFN- Expression. Journal of Biological Chemistry, 286 (12). pp. 10316-10328. ISSN 0021-9258

Downey, Liam and Lawlor, Bob and Quinn, Ciaran (2013) GSE1 Postgraduate Information Literacy and Communication Skills Training-Project Orientated Delivery. In: NUI Maynooth Teaching and Learning Showcase 2012/13, 8th May, 2013, NUI Maynooth. (Unpublished)

Doyle, Sean (2011) Fungal proteomics: from identitcation to function. Microbiology Letters, 321. pp. 1-9.

Doyle, Sean and Corcoran, Amanda (2006) The Immune Response to Parvovirus B19 Exposure in previously Seronegative and Seropositive Individuals. The Journal of Infectious Diseases, 194. pp. 154-158.

Doyle, Sean and Fox, M. and Gray, G. and Kavanagh, K. (2004) Detection of Aspergillus fumigatus mycotoxins: immunogen synthesis and immunoassay development. Journal of Microbiological Methods, 56. pp. 221-230.

Doyle, Sean and Mahon, Bernard and Corcoran, A. and Daly, P. (2002) High-Sensitivity PCR Detection of Parvovirus B19 Plasma. Journal of Clinical Microbiology, 40 (6). pp. 1958-1962.

Doyle, Dr. Sean and Corcoran, Dr. Amanda (2004) Advances in the biology, diagnosis and host-pathogen interactions of parvovirus B19. Journal of Medical Microbiology, 53. pp. 1-17.

Doyle, Dr. Sean and Daly, Dr. P. (2003) The development of a competitive PCR-ELISA for the detection of equine herpesvirus-1. Journal of Virological Methods, 107. pp. 237-244.

Doyle, Dr. Sean and Daly, Dr. P. and Collier, Dr. T. (2002) PCR-ELISA detection of Escherichia coli in milk. Letters in Applied Microbiology, 34. pp. 222-226.

Doyle, Sarah L. and Shirey, Kari Ann and McGettrick, Anne F. and Kenny, Elaine F. and Carpenter, Susan B. and Caffrey, Brian E. and Gardan, Siobhan and Quinn, Susan R. and Cammano, Jorge H. and Moynagh, Paul N. and Vogel, Stefani N. and O'Neill, Luke A. (2013) NFκB2 p52 has a role in antiviral immunity through IKKε -dependent induction of Sp1 and IL-15. Journal of Biological Chemistry. ISSN 0021-9258

Duffy, Ken R. and Subramanian, Vijay G. (2009) On the impact of correlation between collaterally consanguineous cells on lymphocyte population dynamics. Journal of Mathematical Biology, 59 (2). pp. 255-285. ISSN 1432-1416

Dunne, Aisling (2011) Can Plant Plastid Produce a Candidate Influenza Vaccine? PhD thesis, National University of Ireland Maynooth.

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Eissing, Thomas and Waldherr, Steffen and Gondro, Cedric and Bullinger, Eric and Sawodny, Oliver and Allgöwer, Frank and Scheurich, Peter and Sauter, Thomas (2006) Sensitivity analysis of programmed cell death and implications for crosstalk phenomena during Tumor Necrosis Factor stimulation. In: Proceedings of the 2006 IEEE International Conference on Control Applications Munich, Germany, October 4-6, 2006. IEEE, pp. 1746-1752. ISBN 0-7803-9797-5

Eivazian Kary, Naser and Niknam, Gholamreza and Griffin, Christine T. and Mohammadi, Seyed Abolgasem and Moghaddam, Mohammad (2009) A survey of entomopathogenic nematodes of the families Steinernematidae and Heterorhabditidae (Nematoda: Rhabditida) in the north-west of Iran. Nematology, 11 (1). pp. 107-116. ISSN 1388-5545

English, K. and Ryan, J.M. and Tobin, L. and Murphy, M.J. and Barry, F.P. and Mahon, B.P. (2009) Cell contact, prostaglandin E2 and transforming growth factor beta 1 play non-redundant roles in human mesenchymal stem cell induction of CD4+CD25High forkhead box P3+ regulatory T cells. Clinical and Experimental Immunology, 156. pp. 149-160.

English, Karen and Barry, Frank P. and Mahon, Bernard P. (2008) Murine mesenchymal stem cells suppress dendritic cell migration, maturation and antigen presentation. Immunology Letters, 115. pp. 50-58.

English, Karen and Brady, Claire and Corcoran, Paul and Cassidy, Joseph P. and Mahon, Bernard P. (2006) Inflammation of the respiratory tract is associated with CCL28 and CCR10 expression in a murine model of allergic asthma. Physiology and Behavior, 87. pp. 842-847.

Ennis, D.P. and Cassidy, J.P. and Mahon, B.P. (2004) Prior Bordetella pertussis infection modulates allergen priming and the severity of airway pathology in a murine model of allergic asthma. Clinical and Experimental Allergy, 34. pp. 1488-1497.

Ennis, Darragh (2009) Behavioural interactions between the large pine weevil, Hylobius abietis L.(Coleoptera: Curculionidae), and entomopathogenic nematodes. PhD thesis, National University of Ireland Maynooth.

Ennis, Darragh E. and Dillon, Aoife B. and Griffin, Christine T. (2010) Pine weevils modulate defensive behaviour in response to parasites of differing virulence. Animal Behaviour, 80. pp. 283-288. ISSN 0003-3472

Ennis, Darren P. and Cassidy, Joseph P. and Mahon, Bernard P. (2005) Acellular Pertussis Vaccine Protects against Exacerbation of Allergic Asthma Due to Bordetella pertussis in a Murine Model. Clinical and Diagnostic Laboratory Immunology, 12. pp. 409-417.

Ennis, Darren P. and Cassidy, Joseph P. and Mahona, Bernard P. (2005) Whole-cell pertussis vaccine protects against Bordetella pertussis exacerbation of allergic asthma. Immunology Letters, 97. pp. 91-100.

Ennisa, Darren P. and Cassidy, Joseph P. and Mahon, Bernard P. (2004) Whole-cell pertussis vaccine protects against Bordetella pertussis exacerbation of allergic asthma. Immunology Letters, 97 (1). pp. 91-100.

Enright, M.R. and Griffin, C.T. (2004) Specificity of Association between Paenibacillus spp. and the Entomopathogenic Nematodes, Heterorhabditis spp. Microbial Ecology, 48. pp. 412-421.

Enright, Michael R. and Griffin, C.T. (2005) Effects of Paenibacillus nematophilus on the entomopathogenic nematode Heterorhabditis megidis. Journal of Invertebrate Pathology, 88. pp. 40-48.

Eshwika, Ahmed and Coyle, Barry and Devereux, Michael and McCann, Malachy and Kavanagh, Kevin (2004) Metal complexes of 1,10-phenanthroline-5,6-dione alter the susceptibility of the yeast Candida albicans to Amphotericin B and Miconazole. Biometals, 17. pp. 415-422.

Eshwika, Ahmed and Kelly, Judy and Fallon, John P. and Kavanagh, Kevin (2013) Exposure of Aspergillus fumigatus to caspofungin results in the release, and de novo biosynthesis, of gliotoxin. Medical Mycology, 51. pp. 121-127. ISSN 1232-986X

Everard, A. and Griffin, C.T. and Dillon, A.B. (2009) Competition and intraguild predation between the braconid parasitoid Bracon hylobii and the entomopathogenic nematode Heterorhabditis downesi, natural enemies of the large pine weevil, Hylobius abietis. Bulletin of Entomological Research, 99. pp. 151-161. ISSN 0007-4853

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Fallon, John (2010) An analysis of the interaction of environmental and clinical isolates of Aspergillus fumigatus with vertebrate and invertebrate immune responses. PhD thesis, National University of Ireland Maynooth.

Fallon, John P. and Reeves, Emer P. and Kavanagh, Kevin (2010) Inhibition of neutrophil function following exposure to the Aspergillus fumigatus toxin fumagillin. Journal of Medical Microbiology, 59 (6). pp. 625-633. ISSN 0022-2615

Fallon, John P. and Reeves, Emer P. and Kavanagh, Kevin (2011) The Aspergillus fumigatus toxin fumagillin suppresses the immune response of Galleria mellonella larvae by inhibiting the action of haemocytes. Microbiology, 157 (5). pp. 1481-1488. ISSN 1465-2080

Fallon, John P. and Troy, Niamh and Kavanagh, Kevin (2011) Pre-exposure of Galleria mellonella larvae to different doses of Aspergillus fumigatus conidia causes differential activation of cellular and humoral immune responses. Virulence, 2 (5). pp. 413-425. ISSN 2150-5594

Fares, Mario A (2004) SWAPSC: sliding window analysis procedure to detect selective constraints. Bioinformatics, 20 (16). pp. 2867-2868.

Fares, Mario A. and Keane, Orla M. and Toft, Christina and Carretero-Paulet, Lorenzo and Jones, Gary W (2013) The Roles of Whole-Genome and Small-Scale Duplications in the Functional Specialization of Saccharomyces cerevisiae Genes. PLos Genetics, 9 (1). e1003176. ISSN 1553-7390

Fares, Mario Ali and Moya, Andres and Barrio, Eladio (2004) GroEL and the maintenance of bacterial endosymbiosis. Trends in Genetics, 20 (9). pp. 413-416.

Farina, Marcello and Findeisen, Rolf and Bullinger, Eric and Bittanti, Sergio and Allgöwer, Frank and Wellstead, Peter (2006) Results Towards Identifiability Properties of Biochemical Reaction Networks. In: 45th IEEE Conference on Decision & Control Manchester Grand Hyatt Hotel San Diego, CA, USA, December 13-15, 2006. IEEE, pp. 2104-2109. ISBN 1-4244-0171-2

Ferreira, Jorge and Middleton, Rick (2008) An in-silico analysis of the SMART study of HIV infection. IFAC Symposia Series.

Ferreira, Jorge and Middleton, Rick (2008) An in-silico analysis of the SMART study of HIV infection. In: 7th IFAC Symposium on Modelling and Control, November 2008.

Feuda, Roberto (2012) Comparative genomics of early animal evolution. PhD thesis, National University of Ireland Maynooth.

Feuda, Roberto and Hamilton, Sinead C. and McInerney, James O. and Pisani, Davide (2012) Metazoan opsin evolution reveals a simple route to animal vision. Proceedings of the National Academy of Sciences . ISSN 1091-6490

Fisher, John F. and Kavanagh, Kevin and Sobel, Jack D. and Kauffman, Carol A. and Newman, Cheryl A. (2011) Candida Urinary Tract Infection: Pathogenesis. Clinical Infectious Diseases, 52 (S6). S437-S451. ISSN 1058-4838

Fitters, Paul F.L. and Griffin, Christine T. (2004) Spontaneous and induced activity of Heterorhabditis megidis infective juveniles during storage. Nematology, 6. pp. 911-917.

Fitters, Paul F.L. and Griffin, Christine T. (2006) Survival, starvation, and activity in Heterorhabditis megidis (Nematoda: Heterorhabditidae). Biological Control, 37. pp. 82-88.

Fitzpatrick, David A. (2011) Horizontal gene transfer in fungi. Microbiology Letters.

Fitzpatrick, David A. and Creevey, Christopher J. and McInerney, James O. (2006) Genome Phylogenies Indicate a Meaningful a-Proteobacterial Phylogeny and Support a Grouping of the Mitochondria with the Rickettsiales. Molecular Biology and Evolution, 23 (1). pp. 74-85.

Fitzpatrick, David A. and Logue, Mary E. and Butler, Geraldine (2008) Evidence of recent interkingdom horizontal gene transfer between bacteria and Candida parapsilosis. BMC Evolutionary Biology, 8. pp. 181-195. ISSN 1471-2148

Fitzpatrick, David A. and Logue, Mary E. and Stajich, Jason E. and Butler, Geraldine (2006) A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis. BMC Evolutionary Biology, 6. pp. 99-113. ISSN 1471-2148

Fitzpatrick, David A. and McInerney, James O. (2005) Evidence of Positive Darwinian Selection in Omp85, a Highly Conserved Bacterial Outer Membrane Protein Essential for Cell Viability. Journal of Molecular Evolution, 61 (1). pp. 90-98.

Fitzpatrick, David A. and O'Brien, Jennifer and Moran, Ciara and Hasin, Naushaba and Kenny, Elaine and Cormican, Paul and Gates, Amy and Morris, Derek W. and Jones, Gary W (2011) Assessment of Inactivating Stop Codon Mutations in Forty Saccharomyces cerevisiae Strains: Implications for [PSI+] Prion-Mediated Phenotypes. PLoS ONE, 6 (12 e28684). pp. 1-11. ISSN 1932-6203

Fitzpatrick, David A. and O'Gaora, Peadar and Byrne, Kevin P. and Butler, Geraldine (2010) Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser. BMC Genomics, 11 (290). pp. 1-14. ISSN 1471-2164

Fitzpatrick, David A. and O'Halloran, Damien M. (2012) Investigating the Relationship between Topology and Evolution in a Dynamic Nematode Odor Genetic Network. International Journal of Evolutionary Biology, 2012 (548081). ISSN 2090-052X

Fitzpatrick, David A. and O'Halloran, Damien M. and Burnell, Ann M. (2006) Multiple lineage specific expansions within the guanylyl cyclase gene family. BMC Evolutionary Biology, 6. pp. 26-43. ISSN 1471-2148

Flynn, Marion A. and Casey, David G. and Todryk, Stephen M. and Mahon, Bernard P. (2004) Efficient delivery of small interfering RNA for inhibition of IL-12p40 expression in vivo. Journal of Inflammation, 1 (4). pp. 1-12.

Fullam, Anthony and Schroder, Martina (2013) DExD/H-box RNA helicases as mediators of anti-viral innate immunity and essential host factors for viral replication. Molecular and Cellular Biology, 1829. pp. 854-865. ISSN 0270-7306

G

Gallagher, Lorna (2010) Functional Genomic Analysis of Natural Product Biosynthesis and Secretion in Aspergillus fumigatus. PhD thesis, National University of Ireland Maynooth.

Gallagher, Lorna and Owens, Rebecca A. and Dolan, Stephen K. and O'Keefe, Grainne and Schrettl, Markus and Kavanagh, Kevin and Jones, Gary W and Doyle, Sean (2012) The Aspergillus fumigatus Protein GliK Protects against Oxidative Stress and Is Essential for Gliotoxin Biosynthesis. Eukaryotic Cell, 11 (10). pp. 1226-1238. ISSN 1535-9778

Gargan, Siobhan (2011) Probing the Mechanisms Underlying the Regulatory Effects of Cactin in Innate Immune Signalling Pathways. PhD thesis, National University of Ireland Maynooth.

Garland, M.R. and Lavelle, E and Doherty, D and Golden-Mason, L. and Fitzpatrick, P and Hill, A and Walsh, N and O'Farrelly, C (2004) Cortisol does not mediate the suppressive effects of psychiatric morbidity on natural killer cell activity: a cross-sectional study of patients with early breast cancer. Psychological Medicine, 34 (3). pp. 481-490.

Geraghty, Patrick and Kavanagh, Kevin (2003) Erythromycin, an inhibitor of mitoribosomal protein biosynthesis, alters the amphotericin B susceptibility of Candida albicans. Journal of Pharmacy and Pharmacology, 55 (2). pp. 179-184.

Gilbert, Jennifer L. (2009) The Role of Bone Morphogenetic Protein (BMP) Signalling in Lung Cancer and Lung Regeneration. PhD thesis, National University of Ireland Maynooth.

Girling, R.D. and Ennis, D. and Dillon, A.B. and Griffin, C.T. (2010) The lethal and sub-lethal consequences of entomopathogenic nematode infestation and exposure for adult pine weevils, Hylobius abietis (Coleoptera: Curculionidae). Journal of Invertebrate Pathology, 104 (3). pp. 195-202. ISSN 0022-2011

Goyal, K. and Browne, J.A. and Burnell, A.M. and Tunnacliffe, A. (2005) Dehydration-induced tps gene transcripts from an anhydrobiotic nematode contain novel spliced leaders and encode atypical GT-20 family proteins. Biochimie, 87. pp. 565-574.

Goyal, Kshamata and Tisi, Laurence and Basran, Amrik and Browne, John and Burnell, Ann and Zurdo, Jesus and Tunnacliffe, Alan (2003) Transition from Natively Unfolded to Folded State Induced by Desiccation in an Anhydrobiotic Nematode Protein. The Journal of Biological Chemistry, 278 (15). pp. 12977-12984.

Griffin, Bryan D. and Mellett, Mark and Campos-Torres, Antonio and Kinsella, Gemma K. and Wang, Bingwei and Moynagh, Paul N. (2011) A poxviral homolog of the Pellino protein inhibits Toll and Toll-like receptor signalling. European Journal of Immunology, 41 (3). pp. 798-812.

Griffin, C.T. and Boemare, N.E. and Lewis, E.E. (2005) Biology and Behaviour. Nematodes as Biocontrol Agents.

Griffin, Christine T. (2012) Perspectives on the Behavior of Entomopathogenic Nematodes from Dispersal to Reproduction: Traits Contributing to Nematode Fitness and Biocontrol Efficacy. Journal of Nematology, 44 (2). pp. 177-184. ISSN 0022-300X

Griffin, Christine T. and Dix, Ilona and Joyce, Susan A. and Burnell, Ann M. and Downes, Martin J. (1999) Isolation and characterisation of Heterorhabditis spp. (Nematoda: Heterorhabditidae) from Hungary, Estonia and Denmark. Nematology, 1 (3). pp. 321-332.

Griffin, Christine T. and Joyce, Susan A. and Dix, Ilona and Burnell, Ann M. and Downes, Martin J. (1994) Characterisation of the entomopathogenic nematode Heterorhabditk (Nematoda : Heterorhabditidae) from Ireland and Britain by molecular and cross-breeding techniques,and the occurrence of the genus in these islands. Fundalmental Applied Nematology, 17 (3). pp. 245-253.

Griffin, Matthew D. and Ritter, Thomas and Mahon, Bernard P. (2010) Immunological Aspects of Allogeneic Mesenchymal Stem Cell Therapies. Human Gene Theraphy, 21 (12). pp. 1641-1655.

Griffith, Darren M. and Duff, Brian and Suponitsky, Kyrill Y. and Kavanagh, Kevin and Morgan, Maria P. and Egan, Denise and Marmion, Celine J. (2011) Novel trans-platinum complexes of the histone deacetylase inhibitor valproic acid; synthesis, in vitro cytotoxicity and mutagenicity. Journal of Inorganic Biochemistry, 105 (6). pp. 793-799. ISSN 0162-0134

H

Haggerty, Leanne S. (2012) Exploring the Non-vertical Component of Bacterial Evolution Using Network Structures. PhD thesis, National University of Ireland Maynooth.

Hamilton, Sinead C. (2012) Environmentally Influenced Duplication Patterns Followed by Functional Shifts Fueling the Evolution of Metazoan Sensory Systems. PhD thesis, National University of Ireland Maynooth.

Harvey, Christopher D. (2010) Ecological impact of entomopathogenic nematodes used to control the large pine weevil, Hylobius abietis (Coleoptera: Curculionidae). PhD thesis, National University of Ireland Maynooth.

Harvey, Deirdre and Smith, Roisin and English, Karen and Mahon, Bernard and Commins, Sean (2006) Interleukin-10 (IL-10) but not Lipopolysaccharide (LPS) produces increased motor activity and abnormal exploratory patterns while impairing spatial learning in Balb/c mice. Immunology Letters, 103. pp. 92-100.

Hasin, Naushaba (2012) Functional significance of Hsp70 post-translational modification in prion propagation and cellular function. PhD thesis, National University of Ireland Maynooth.

Hennessy, Roseanne (2012) Effects of a dual application of entomopathogenic nematodes and entomopathogenic fungi against a forest pest, Hylobius abietis L. (Coleoptera: Curculionidae) and a horticultural pest, Otiorhynchus sulcatus F. (Coleoptera: Curculionidae). Masters thesis, National University of Ireland Maynooth.

Hogan, Andrew E. (2010) Characterisation of the immunomodulatory properties of human natural killer T cells. PhD thesis, National University of Ireland Maynooth.

Hogan, A.E. and Tobin, A.M. and Ahern, T. and Corrigan, M.A. and Gaoatswe, G. and Jackson, R. and O’Reilly, V. and Lynch, L. and Doherty, D.G. and Moynagh, P.N. and Kirby, B. and O’Connell, J. and O'Shea, D. (2011) Glucagon-like peptide-1 (GLP-1) and the regulation of human invariant natural killer Tcells: lessons from obesity, diabetes and psoriasis. Diabetologia, 54 (11). pp. 2745-2754. ISSN 0012-186X

Holton, Therese A. (2011) Phylogenomic supertrees: integration of maximal data and assessment of input tree shape. PhD thesis, National University of Ireland Maynooth.

J

Jackson, Ruaidhri (2013) Defining the Physiological and Molecular Role of Pellino3 in TLR3 Signalling. PhD thesis, National University of Ireland Maynooth.

Jarmuda, Stanislaw and O’Reilly, Niamh and Zaba, Ryszard and Jakubowicz, Oliwia and Szkaradkiewicz, Andrzej and Kavanagh, Kevin (2012) The potential role of Demodex folliculorum mites and bacteria in the induction of rosacea. Journal of Medical Microbiology, 61 (11 ). pp. 1504-1510. ISSN 0022-2615

Jones, Gary and Song, Youtao and Chung, Seyung and Masison, Daniel C. (2004) Propagation of Saccharomyces cerevisiae [PSI] Prion Is Impaired by Factors That Regulate Hsp70 Substrate Binding. Molecular and Cellular Biology, 24 (9). pp. 3928-3937.

Jones, Gary W and Tuite, M.F. (2005) Chaperoning prions: the cellular machinery for propagating an infectious protein? BioEssays, 27. pp. 823-832.

Joyce, Susan A. and Burnell, Ann M. and Powers, Thomas O. (1994) Characterization of Heferorhabdifis Isolates by PCR Amplification of Segments of mtDNA and rDNA Genes'. Journal of Nematology, 26 (3). pp. 260-270.

K

Kavanagh, Heather (2010) Stem Cell and Biological Interventions to treat Allergic Airway Disease. PhD thesis, National University of Ireland Maynooth.

Kavanagh, Kevin and Dowd, Susan (2004) Histatins: antimicrobial peptides with therapeutic potential. Journal of Pharmacy and Pharmacology, 56.

Kavanagh, Kevin and Reeves, Emer P. (2004) Exploiting the potential of Insects for in vivo pathogenicity testing of Microbial pathogen. FEMS Microbiology Reviews, 28. pp. 101-112.

Keady, Sarah (2011) Examination of the expression of genes and proteins controlling M. longissimus thoracis et lumborum growth in steers. PhD thesis, National University of Ireland Maynooth.

Keane, T.M. and Naughton, T.J. and Travers, S.A.A. and McInerney, J.O. and McCormack, G.P. (2005) DPRml: distributed phylogeny reconstruction by maximum likelihood. Bioinformatics, 21 (7). pp. 969-974.

Keane, Thomas and Creevey, Christopher and Pentony, Melissa and Naughton, Thomas and McInerney, James (2006) Assessement of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. BMC Evolutionary Biology, 6. pp. 29-46.

Keane, Thomas and Page, Andrew and Naughton, Thomas and Travers, Simon and McInerney, James (2006) Building Large Phylogenetic Trees on Coarse-Grained Parallel Machines. Algorithmica, 45 (3). pp. 285-300.

Keane, Thomas M. and Naughton, Thomas J. and McInerney, James O. (2007) MultiPhyl: a high-throughput phylogenomics webserver using distributed computing. Nucleic Acids Research, 35 (Web Server Issue). W33-W37. ISSN 0305-1048

Keith, Aidan M. and Boots, Bas and Hazard, Christina and Niechoj, Robin and Arroyo, Julio and Bending, Gary D. and Bolger, Tom and Breen, John and Clipson, Nicholas and Doohan, Fiona M. and Griffin, Christine T. and Schmidt, Olaf (2012) Cross-taxa congruence, indicators and environmental gradients in soils under agricultural and extensive land management. European Journal of Soil Biology, 49. pp. 55-62. ISSN 1164-5563

Kellet, Andrew and O'Connor, Mark and McCann, Malachy and Howe, Orla and Casey, Alan and McCarron, Pauraic and Kavanagh, Kevin and McNamara, Mary and Kennedy, Sean and May, Donald D. and Skell, Philip S. and O'Shea, Denis and Devereux, Michael (2011) Water-soluble bis(1,10-phenanthroline) octanedioate Cu2+ and Mn2+ complexes with unprecedented nano and picomolar in vitro cytotoxicity: promising leads for chemotherapeutic drug development. MedChemComm, 2 (7). pp. 579-584. ISSN 2040-2503

Kelly, Anna M. and Golden-Mason, Lucy and McEntee, Gerry and Traynor, Oscar and Doherty, Derek G. and Hegarty, John E. and O'Farrelly, Cliona (2004) Interleukin 12 (IL-12) is increased in tumour bearing human liver and expands CD8C and CD56C T cells in vitro but not in vivo. Cytokine, 25. pp. 273-282.

Kelly, Judy and Kavanagh, Kevin (2011) Caspofungin primes the immune response of the larvae of Galleria mellonella and induces a non-specific antimicrobial response. Journal of Medical Microbiology, 60 (2). pp. 189-196. ISSN 0022-2615

Kelly-Rogers, Jane and Madrigal-Estebas, Laura and O'Connor, Tony and Doherty, Derek G. (2006) Activation-Induced Expression of CD56 by T Cells Is Associated With a Reprogramming of Cytolytic Activity and Cytokine Secretion Profile In Vitro. Human Immunology, 67. pp. 863-873.

Kenis, M. and Wegensteiner, R. and Griffin, C.T. (2004) Parasitoids, predators, nematodes and pathogens associated with bark weevil pests in Europe. In: UNSPECIFIED Kluwer Academic Publishers, pp. 395-414.

Kenna, Tony and Golden-Mason, Lucy and Norris, Suzanne and Hegarty, John E. and O'Farrelly, Cliona and Doherty, Derek G. (2004) Distinct subpopulations of gy T cells are present in normal and tumor-bearing human liv. Clinical Immunology, 113 (1). pp. 56-63.

Krippendorff, Ben-Fillippo and Kuester, Katharina and Kloft, Charlotte and Huisinga, Wilhelm (2009) Nonlinear pharmacokinetics of therapeutic proteins resulting from receptor mediated endocytosis. Journal of Pharmacokinetics and Pharmacodynamics , 36 (3). pp. 239-260. ISSN 1567-567X

Krippendorff, Ben-Fillippo and Neuhaus, Roland and Lienau, Philip and Reichel, Andreas and Huisinga, Wilhelm (2009) Mechanism-based Inhibition: Deriving KI and kinact directly from Time-Dependent IC50 Values. Journal of Biomedical Screening, 14 (8). pp. 913-923. ISSN 1087-0571

Kullyev, Audrey and Dempsey, Catherine M. and Miller, Sarah and Kuan, Chih-Jen and Hapiak, Vera M. and Komuniecki, Richard W. and Griffin, Christine T. and Sze, Ji Ying (2010) A Genetic Survey of Fluoxetine Action on Synaptic Transmission in Caenorhabditis elegans. Genetics, 186 (3). pp. 929-941. ISSN 0016-6731

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Lacey, N. and Delaney, S. and Kavanagh, K. and Powell, F.C. (2007) Mite-related bacterial antigens stimulate inflammatory cells in rosacea. British Journal of Dermatology.

Lacey, N. and Delaney, S. and Kavanagh, K. and Powell, F.C. (2007) Mite-related bacterial antigens stimulate inflammatory cells in rosacea. British Journal of Dermatology, 157. pp. 474-481.

Lewis, Caroline (2010) Identification and characterisation of novel marker proteins involved in X-linked muscular dystrophy. PhD thesis, National University of Ireland Maynooth.

Lewis, Caroline and Jockusch, Harald and Ohlendieck, Kay (2010) Proteomic Profiling of the Dystrophin-Deficient MDX Heart Reveals Drastically Altered Levels of KeyMetabolic and Contractile Proteins. Journal of Biomedicine and Biotechnology, 2010 (648501). pp. 1-20. ISSN 1110-7243

Lewis, Edwin E. and Campbell, James and Griffin, Christine and Kaya, Harry and Peters, Arne (2006) Behavioral ecology of entomopathogenic nematodes. Biological Control, 38. pp. 66-79.

Li, Jianjing and O'Reilly, Niamh and Sheha, Hosam and Katz, Raananah and Raju, Vadrevu K. and Kavanagh, Kevin and Scheffer, C. G. Tseng (2010) Correlation between Ocular Demodex Infestation and Serum Immunoreactivity to Bacillus Proteins in Patients with Facial Rosacea. Ophthalmology, 117 (5). pp. 870-877. ISSN 0161-6420

Lian, Hui-Yong and Jiang, Yi and Zhang, Hong and Jones, Gary and Perrett, Sarah (2006) The yeast prion protein Ure2: Structure, function and folding. Biochimica et Biophysica Acta - Proteins and Proteomics, 1764 (3). pp. 535-545.

Lola-Luz, Theodora and Downes, Martin and Dunne, Richard (2005) Control of Black Vine Weevil larvae Otiorhynchus sulcatus (Fabricius) (Coleoptera:Curculionidae) in grow bags outdoors with nematodes. Agricultural and Forest Entomology, 7. pp. 121-126.

Lowther, Jonathan and Robinson, Mark W. and Donnelly, Sheila M. and Xu, Weibo and Stack, Colin M. and Matthews, Jacqueline M. and Dalton, John P. (2009) The Importance of pH in Regulating the Function of the Fasciola hepatica Cathepsin L1 Cysteine Protease. PLoS Neglected Tropical Diseases, 3 (1). pp. 1-11. ISSN 1935-2727

Lynch, E.M. and Earley, B. and McGee, M. and Doyle, S. (2010) Effect of abrupt weaning at housing on leukocyte distribution, functional activity of neutrophils, and acute phase protein response of beef calves. BMC Veterinary Research, 6 (39). pp. 1-9. ISSN 1746-6148

Lynch, Eilish M. and Earley, Bernadette and McGee, Mark and Doyle, Sean (2010) Characterisation of physiological and immunological responses in beef cows to abrupt weaning and subsequent housing. BMC Veterinary Research, 6 (37). pp. 1-8. ISSN 1746-6148

Lynch, Eilish M. and McGee, Mark and Doyle, Sean and Earley, Bernadette (2012) Effect of pre-weaning concentrate supplementation on peripheral distribution of leukocytes, functional activity of neutrophils, acute phase protein and behavioural responses of abruptly weaned and housed beef calves. BMC Veterinary Research, 8 (1). ISSN 1746-6148

Lynch, Eilish Mairéad (2010) Characterisation of physiological and immune-related biomarkers of weaning stress in beef cattle. PhD thesis, National University of Ireland Maynooth.

Lynn, David J. and Higgs, Rowan and Gaines, Susan and Tierney, Joanna and James, Tharappel and Lloyd, Andrew T. and Fares, Mario A. and Mulcahy, Grace and O'Farrelly, Cliona (2004) Bioinformatic discovery and initial characterisation of nine novel antimicrobial peptide genes in the chicken. Immunogenetics, 56 (3). pp. 170-176.

Lynn, David J. and Lloyd, Andrew T. and Fares, Mario A. and O'Farrelly, Cliona (2004) Evidence of Positively Selected Sites in Mammalian a-Defensins. Molecular Biology and Evolution, 21 (5). pp. 819-827.

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Madigan, Gillian (2012) Evaluation of Different Methods for the Detection of Mycobacterium bovis in Lymph Node Tissue. Masters thesis, National University of Ireland Maynooth.

Madsen, Declan and Cantwell, Emma R. and O'Brien, Timothy and Johnson, Patricia A. and Mahon, Bernard P. (2009) Adeno-associated virus serotype 2 induces cell-mediated immune responses directed against multiple epitopes of the capsid protein VP1. Journal of General Virology, 90 (11). pp. 2622-2633. ISSN 1465-2099

Madsen, Declan Paul (2009) The Immunology of Adeno-Associated Virus Serotype 2. PhD thesis, National University of Ireland Maynooth.

Mahon, Bernard (2000) The Irish Society for Immunology. Immunology Letters, 73.

Mahon, Bernard and Doyle, Sean and Corcoran, Amanda (2004) B Cell Memory is directed toward conformational epitopes of parvovirus B19 capsid proteins and the unique region of VP1. The Journal of Infectious Diseases, 189. pp. 1873-80.

Mahon, Dr. Bernard and Brady, Dr. Miriam and Mills, Prof. Kingston (2000) Protection against Bordetella pertussis in mice in the absence of detectable circulating antibody: implications for long-term immunity in children. The Journal of Infectious Diseases, 181. pp. 2087-2091.

Mahon, Dr. Bernard and Corcoran, Dr. Amanda and McParland, Dr. Peter and Davoren, Dr. Anne and Doyle, Dr. Sean (2003) Ex Vivo Cytokine responses against Parvovirus B19 Antigens in previously infected pregnant women. Journal of Medial Virology, 70. pp. 475-480.

Mahon, Dr. Bernard and Doyle, Dr. Sean and Kavanagh, Dr. Kevin and Corcoran, Dr. A. and Ennis, Dr. O. (2001) Baculovirus expression of parvovirus B19 (B19V) NS1: utility in confirming recent infection. Journal of Clinical Virology, 22. pp. 55-60.

Mahon, Dr. Bernard and Ennis, Dr. D.P. and Cassidy, Dr. J.P. (2004) Prior Bordetella pertussis infection modulates allergen priming and the severity of airway pathology in a murine model of allergic asthma. Journal of Clinical and Experimental Allergy.

Mahon, Dr. Bernard and Ennisa, Dr. Darren and Cassidy, Dr. Joseph (2004) Whole-cell pertussis vaccine protects against Bordetella pertussis exacerbation of allergic asthma. Immunology Letters, xxx. pp. 1-10.

Mahon, Dr. Bernard and Flynn, Dr. Marion (2003) Cell Mediated and Humoral Immune responses to Mumps Virus: Recent Developments. Recent Research Developments in Virology, 5. pp. 97-115.

Mahon, Dr. Bernard and Flynn, Dr. Marion A. and Casey, Dr. David G. and Todryk, Dr. Stephen M. (2004) Efficient delivery of small interfering RNA for inhibition of IL-12p40 expression in vivo. Journal of Inflammation, 1 (4). pp. 1-12.

Mahon, Dr. Bernard and Mills, Prof. Kingston (1999) Interferon-g mediated immune effector mechanisms against Bordetella pertussis. Immunology Letters, 68. pp. 213-217.

Mahony, Shaun and McInerney, James O. and Smith, Terry J. and Golden, Aaron (2004) Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models. BMC Bioinformatics, 5 (1). p. 23.

Malpas, Simon C. and Leonard, Bridget L. and Guild, Sarah-Jane and Ringwood, John V. and Navakatikyan, Michael and Austin, Paul C. and Head, Geoffrey A. and Burgess, Don E. (2001) The sympathetic nervous system's role in regulating blood pressure variability. IEEE Engineering in Medicine and Biology Magazine, 20 (2). pp. 17-24. ISSN 0739-5175

Malynn, Sandra and Campos-Torres, Antonio and Moynagh, Paul N. and Haas, Jana (2013) The Pro-inflammatory Cytokine TNF-a Regulates the Activity and Expression of the Serotonin Transporter (SERT) in Astrocytes. Neurochemical Research, 38 (4). pp. 694-704. ISSN 0364-3190

Martin, Fergal (2009) Exploring the boundaries of shallow phylogeny in the YESS group and the dynamics of gene cluster and operon formation in bacterial genomes. PhD thesis, National University of Ireland Maynooth.

Martin, Fergal J. and McInerney, James O. (2009) Recurring cluster and operon assembly for Phenylacetate degradation genes. BMC Evolutionary Biology, 9. p. 36. ISSN 1471-2148)

Mason, Oliver and Verwoerd, Mark (2007) Graph Theory and Networks in Biology. IET Systems Biology, 1 (2). pp. 89-119. ISSN 1751-8857

Masterson, Joanne C. and O'Dea, Shirley (2007) Posttranslational Truncation of E-Cadherin and Significance for Tumour Progression. Cells Tissues Organs, 185. pp. 175-179. ISSN 1422-6405

Matijssen, C. and Kinsella, G.K. and Watson, G.W. and Rozas, I. (2012) Computational study of the proton affinity and basicity of structurally diverse a1-adrenoceptor ligands. Journal of Physical Organic Chemistry, 25. pp. 351-360. ISSN 0894-3230

McCann, Malachy and Coyle, Barry and Kavanagh, Kevin and McKee, Vickie and Kayal, Nijhuma and Egan, Denise and Deegan, Carol Deegan and Finn, Gregory J. and Devereux, Michael (2004) Synthesis, X-ray crystal structure, anti-fungal and anti-cancer activity of [Ag2(NH3)2(salH)2] (salH2 ¼salicylic acid). Journal of Inorganic Biochemistry, 98. pp. 1361-1366.

McCann, Malachy and Curran, Robert and Ben-Shoshan, Marcia and McKie, Vicky and Ali Tahir, Asif and Devereux, Michael and Kavanagh, Kevin and Creaven, Bernadette S. and Kellet, Andrew (2012) Silver(I) complexes of 9-anthracenecarboxylic acid and imidazoles: synthesis, structure and antimicrobial activity. Dalton Transactions, 41 (21). 6516-6527 . ISSN 1477-9226

McCann, Malachy and Santos, Andre L. S. and Da Silva, Bianca A. and Romanos, Maria Teresa V. and Pyrrho, Alexandre S. and Devereux, Michael and Kavanagh, Kevin and Fichtnerg, Iduna and Kellett, Andrew (2012) In vitro and in vivo studies into the biological activities of 1,10-phenanthroline, 1,10-phenanthroline-5,6-dione and its copper(II) and silver(I) complexes. Toxicology Research, 1 (1). pp. 47-54. ISSN 2045-452X

McCarthy, Elaine and Stack, Colin and Donnelly, Sheila M. and Doyle, Sean and Mann, Victoria H. and Brindley, Paul J. and Stewart, Michael and Day, Tim A. and Maule, Aaron G. and Dalton, John P. (2005) Leucine aminopeptidase of the human blood flukes, Schistosoma mansoni and Schistosoma japonicum. International Journal of Parasitology, 34 (6). pp. 703-714.

McGill, Lorraine M. (2011) A Molecular and Phylogenetic Analysis of Cryobiosis in Nematodes of the Genus Panagrolaimus. PhD thesis, National University of Ireland Maynooth.

McInerney, James (2006) On the desirability of models for inferring genome phylogenies. Trends in Microbiology, 14 (1). pp. 1-2.

McInerney, James O. (2006) The causes of protein evolutionary rate variation. Trends in Ecology and Evolution, 21 (5). pp. 230-232.

McInerney, James O. and Wilkinson, Mark (2005) New methods ring changes for the tree of life. Trends in Ecology and Evolution, 20 (3). pp. 105-107.

McInerney, James O. and Wilkinson, Mark and Patching, John W. and Embley, T. Martin and Powell, Richard (1995) Recovery and Phylogenetic Analysis of Novel Archaeal rRNA Sequences from a Deep-Sea Deposit Feeder. Applied and Environmental Microbiology (AEM), 61 (4). pp. 1646-1648. ISSN 1098-5336

McQuaid, Kate (2013) The Interactions for the RBP Receptor, Stimulated by Retinoic Acid Gene 6. PhD thesis, National University of Ireland Maynooth.

McWeeney, Hilton Donal (2011) Phenotypic variation in Photorhabdus temperata K122. PhD thesis, National University of Ireland Maynooth.

Mellett, Mark and Atzei, Paola and Jackson, Ruaidhri and O’Neill, Luke A. and Moynagh, Paul N. (2011) Mal Mediates TLR-Induced Activation of CREB and Expression of IL-10. Journal of Immunology, 186 (8). pp. 4925-4935. ISSN 0022-1767

Miller, Catherine M. D. and Smith, Nicholas C. and Ikin, Rowan J. and Boulter, Nicola R. and Dalton, John P. and Donnelly, Sheila (2009) Immunological Interactions between 2 Common Pathogens, Th1-Inducing Protozoan Toxoplasma gondii and the Th2-Inducing Helminth Fasciola hepatica. PLoS ONE, 4 (5 e5692). pp. 1-10. ISSN 1932-6203

Mills, Kingston and Ryan, Mark and McGuirk, Peter and Griffin, Fiona and Murphy, Geraldine and Mahon, Bernard (1999) The Immunology of Bordetella pertussis Infection. Biologicals, 27. p. 77.

Molloy, Emer Louise (2008) Bone Morphogenetic Protein Signalling in Adult Lung Epithelial Cells. PhD thesis, National University of Ireland Maynooth.

Moran, Ciara (2010) Mutational analysis of Hsp110 suggests an integral role for the chaperone in yeast prion propagation. PhD thesis, National University of Ireland Maynooth.

Moran, Ciara and Kinsella, Gemma K. and Zhang, Zai-Rong and Perrett, Sarah and Jones, Gary W (2013) Mutational Analysis of Sse1 (Hsp110) Suggests an Integral Role for this Chaperone in Yeast Prion Propagation In Vivo. G3. ISSN 2160-1836

Morris, Karen S. and Horgan, Finbarr G. and Downes, Martin J. and Griffin, Christine T. (2011) The effect of temperature on hatch and activity of second-stage juveniles of the root-knot nematode, Meloidogyne minor, an emerging pest in north-west Europe. Nematology, 13 (8). pp. 985-993. ISSN 1388-5545

Mowlds, Peter and Kavanagh, Kevin (2008) Effect of pre-incubation temperature on susceptibility of Galleria mellonella larvae to infection by Candida albicans. Mycopathologia, 165. pp. 5-12.

Mullen, Edel (2011) Proteomic profiling of skeletal muscle tissue from the Goto-Kakizaki rat model of type 2 diabetes. PhD thesis, National University of Ireland Maynooth.

Mullen, Edel and O'Reilly, Elaine and Ohlendieck, Kay (2011) Skeletal muscle tissue from the Goto-Kakizaki rat model of type-2 diabetes exhibits increased levels of the small heat shock protein Hsp27. Molecular Medicine Reports, 4. pp. 229-236. ISSN 1791-2997

Mullen, Edel and Ohlendieck, Kay (2011) Proteomic analysis of the mitochondria-enriched fraction from diabetic rat skeletal muscle. Journal of Integrated Omics, 1 (1). pp. 108-114. ISSN 2182-0287

N

Neville, Claire and Murphy, Alan and Kavanagh, Kevin and Doyle, Sean (2005) A 4'-Phosphopantetheinyl Transferase Mediates Non-Ribosomal Peptide Synthetase Activation in Aspergillus fumigatus. ChemBioChem, 6 (4). pp. 679-685.

Nikdel, Mostafa and Niknam, Gholamreza and Griffin, Christine T. and Kary, Naser Eivazian (2010) Diversity of entomopathogenic nematodes (Nematoda: Steinernematidae, Heterorhabditidae) from Arasbaran forests and rangelands in north-west Iran. Nematologica, 12 (5). pp. 767-773. ISSN 0028-2596

Noone, Cariosa M. and Lewis, Ellen A. and Frawely, Anne B. and Newman, Robert W. and Mahon, Bernard P. and Mills, Kingston H. and Johnson, Patricia A. (2005) Novel mechanism of immunosuppression by influenza virus haemagglutinin: selective suppression of interleukin 12 p35 transcription in murine bone marrow-derived dendritic cells. Journal of General Virology, 86. pp. 1885-1890.

Noone, Cariosa M. and Lewis, Ellen A. and Frawely, Anne B. and Newman, Robert W. and Mahon, Bernard P. and Mills, Kingston H. and Johnson, Patricia A. (2005) Novel mechanism of immunosuppression by influenza virus haemagglutinin: selective suppression of interleukin 12 p35 transcription in murine bone marrow-derived dendritic cells. Journal of General Virology, 86. pp. 1885-1890.

Nugent, Miriam J. and O'Leary, Sean A. and Burnell, Ann M. (1996) Optimised procedures for the cryopreservation of different species of Heterorhabditis. Fundalmental Applied Nematology, 19 (1). pp. 1-6.

O

O'Brien, Jennifer (2012) Using Saccharomyces cerevisiae to characterise the in vivo effects of exposure to the prion-curing drug Tacrine and the fungal metabolite gliotoxin. PhD thesis, National University of Ireland Maynooth.

O'Brien, Martin and Spillane, Charles and Meade, Conor and Mullins, Ewen (2008) An Insight into the Impact of Arable Farming on Irish Biodiversity: A Scarcity of Studies Hinders a Rigorous Assessment. Biology and Environment: Proceedings of the Royal Irish Academy, 108B (2). pp. 97-108. ISSN 0791-7945

O'Connell, Mary J. and McInerney, James O. (2005) Adaptive evolution of the human fatty acid synthase gene: Support for the cancer selection and fat utilization hypotheses? Gene, 360 (2). pp. 151-159.

O'Gorman, Mary T. and Jatoi, Noor A. and Lane, Stephen J. and Mahon, Bernard P. (2005) IL-1b and TNF-a induce increased expression of CCL28 by airway epithelial cells via an NFjB-dependent pathway. Cellular Immunology, 238. pp. 87-96.

O'Hanlon, Karen (2010) A functional genomics approach: Characterisation of two Non-ribosomal peptide synthetase genes, and investigation of an adaptive response towards alkylating DNA damage in Aspergillus fumigatus. PhD thesis, National University of Ireland Maynooth.

O'Hanlon, Karen and Cairns, Timothy and Stack, Deirdre and Schrettl, Markus and Bignell, Elaine and Kavanagh, Kevin and Miggin, Sinead and O'Keeffe, Grainne and Larsen, Thomas and Doyle, Sean (2011) Targeted Disruption of Nonribosomal Peptide Synthetase pes3 Augments the Virulence of Aspergillus fumigatus. Infection and Immunity, 79 (10). pp. 3978-3992. ISSN 0019-9567

O'Hanlon, Karen A. and Gallagher, Lorna and Schrettl, Markus and Jöchl, Christoph and Kavanagh, Kevin and Larsen, Thomas O. and Doyle, Sean (2012) Nonribosomal Peptide Synthetase Genes pesL and pes1 Are Essential for Fumigaclavine C Production in Aspergillus fumigatus. Applied and Environmental Microbiology , 78 (10). pp. 3166-3176. ISSN 0099-2240

O'Hanlon, Karen A. and Margison, Geoffrey P. and Hatch, Amy and Fitzpatrick, David A. and Owens, Rebecca A. and Doyle, Sean and Jones, Gary W (2012) Molecular characterization of an adaptive response to alkylating agents in the opportunistic pathogen Aspergillus fumigatus. Nucleic Acids Research, [Epub ahead of print]. pp. 1-15. ISSN 0305-1048

O'Keefe, Grainne (2011) Functional Characterisation of the Eukaryotic Translation Elongation Factor 1Bγ in Aspergillus fumigatus; A Proteomic Systems Approach. PhD thesis, National University of Ireland Maynooth.

O'Keeffe, Joan and Doherty, Derek G. and Kenna, Tony and Sheahan, Kieran and O'Donoghue, Diarmuid P. and Hyland, John M. and O'Farrelly, Cliona (2004) Diverse populations of T cells with NK cell receptors accumulate in the human intestine in health and in colorectal cancer. European Journal of Immunology, 34. pp. 2110-2119.

O'Keeffe, Joseph and Doyle, Sean and Kavanagh, Kevin (2003) Exposure of the yeast Candida albicans to the anti-neoplastic agent adriamycin increases the tolerance to amphotericin B. Journal of Pharmacy and Pharmacology, 55 (12). pp. 1629-1633.

O'Leary, Sean A. and Stack, Colin M. and Chubb, Michelle A. and Burnell, Ann M. (1998) The effect of day of emergence from the insect cadaver on the behaviour and environmental tolerances of infective juveniles of the entomopathogenic nematode Heterorhabditis Megidis (Strain UK211). Journal of Parasitology, 84 (4). pp. 665-672.

O'Loughlin, Aran (2011) Examination of the effect of weaning stress on the physiological and molecular regulation of immune function in circulating bovine leukocytes. PhD thesis, National University of Ireland Maynooth.

O'Loughlin, Aran and McGee, Mark and Waters, Sinead M. and Doyle, Sean and Earley, Bernadette (2011) Examination of the bovine leukocyte environment using immunogenetic biomarkers to assess immunocompetence following exposure to weaning stress. Veterinary Research, 7 (45). ISSN 0928-4249

O'Reilly, N. and Menezes, N. and Kavanagh, K. (2012) Positive correlation between serum immunoreactivity to Demodex-associated Bacillus proteins and erythematotelangiectatic rosacea. British Journal of Dermatology, 167 (5). pp. 1032-1036. ISSN 0007-0963

O'Reilly, Niamh (2012) An Investigation of the Role of Bacillus oleronius in the Pathogenesis of Rosacea. PhD thesis, National University of Ireland Maynooth.

O'Reilly, Niamh and Gallagher, Clair and Reddy Katikireddy, Kishore and Clynes, Martin and O'Sullivan, Finbarr and Kavanagh, Kevin (2012) Demodex-Associated Bacillus Proteins Induce an Aberrant Wound Healing Response in a Corneal Epithelial Cell Line: Possible Implications for Corneal Ulcer Formation in Ocular Rosacea. Investigative Ophthalmology & Visual Science, 53. pp. 3250-3259. ISSN 0146-0404

Ohlendieck, Kay (2011) Skeletal muscle proteomics: current approaches, technical challenges and emerging techniques. Skeletal Muscle, 1 (6). pp. 1-15.

O’Loughlin, Aran and Lynn, David J. and McGee, Mark and Doyle, Sean and McCabe, Matthew and Earley, Bernadette (2012) Transcriptomic analysis of the stress response to weaning at housing in bovine leukocytes using RNA-seq technology. BMC Genomics, 13 (250). pp. 1-18. ISSN 1471-2164

P

Pearlmutter, Barak A. and Conor J. Houghton, Conor J. (2009) A New Hypothesis for Sleep: Tuning for Criticality. Neural Computation, 21 (6). pp. 1622-1641. ISSN 1530-888X

Philip, Gayle K. and Creevey, Christopher J. and McInerney, James O. (2005) The Opisthokonta and the Ecdysozoa May Not Be Clades: Stronger Support for the Grouping of Plant and Animal than for Animal and Fungi and Stronger Support for the Coelomata than Ecdysozoa. Molecular Biology and Evolution, 22. pp. 1175-1184.

Piasecka, Justyna (2010) Molecular and Microbiological Methods for the Detection and Measurement of Dry Bubble Disease caused by Lecanicillium (Verticillium) fungicola on Mushroom Farms. PhD thesis, National University of Ireland Maynooth.

Pisani, Davide and Mohun, Samantha and Harris, Simon and McInerney, James and Wilkinson, Mark (2006) Molecular evidence for dim-light vision in the last common ancestor of the vertebrates. Current Biology, 16 (9). pp. 318-319.

Popowska, Magdalena and Rzeczycka, Marzenna and Miernik, Antoni and Krawczyk-Balska, Agata and Walsh, Fiona and Duffy, Brion (2012) Influence of Soil Use on Prevalence of Tetracycline, Streptomycin, and Erythromycin Resistance and Associated Resistance Genes. Antimicrobial Agents and Chemotherapy, 56 (3). pp. 1434-1443. ISSN 0066-4804

Purcell, James (2011) Strategies to Target the Bone Morphogenetic Protein Signalling Pathway in Lung Disease. PhD thesis, National University of Ireland Maynooth.

Q

Quasim Butt, Aisha and Ahmed, Suaad M. and Maratha, Ashwini and Miggin, Sinead M. (2012) 14-3-3e and 14-3-3s inhibit Toll-like receptor (TLR)-mediated proinflammatory cytokine induction. Journal of Biological Chemistry, 287 (6). pp. 38665-38679. ISSN 0021-9258

Quinn, Ciaran (2013) Integrating Project Orientated Problem Based Learning (POPBL) and Information Literacy Instruction. In: NUI Maynooth Teaching and Learning Showcase 2012/13, 8th May, 2013, NUI Maynooth. (Unpublished)

R

Reardon, Wesley and Chakrabortee, Sohini and Pereira, Tiago Campos and Tyson, Trevor and Banton, Matthew C. and Dolan, Katharine M. and Culleton, Bridget A. and Wise, Michael J. and Burnell, Ann M. and Tunnacliffe, Alan (2010) Expression profiling and cross-species RNA interference (RNAi) of desiccation-induced transcripts in the anhydrobiotic nematode Aphelenchus avenae. BMC Molecular Biology, 11 (6). ISSN 1471-2199

Reeves, Emer and Nagl, Markus and O'Keeffe, Joseph and Kelly, Judy and Kavanagh, Kevin (2006) Effect of N-chorotaurine on Aspergillus, with particular reference to destruction of secreted gliotoxin. Journal of Medical Microbiology, 55. pp. 913-918.

Reeves, Emer P. and Murphy, Thomas and Daly, Paul and Kavanagh, Kevin (2004) Amphotericin B enhances the synthesis and release of the immunosuppressive agent gliotoxin from the pulmonary pathogen Aspergillus fumigatus. Journal of Medical Microbiology, 53. pp. 1-7.

Reeves, Emer P. and Reiber, Kathrin and Neville, Claire and Scheibner, Olaf and Kavanagh, Kevin and Doyle, Sean (2006) A nonribosomal peptide synthetase (Pes1) confers protection against oxidative stress in Aspergillus fumigatus. The FEBS Journal, 273. pp. 3038-3053. ISSN 1742-464X

Reiber, Kathrin and Reeves, Emer P. and Neville, Claire M. and Winkler, Robert and Gebhardt, Peter and Kavanagh, Kevin and Doyle, Sean (2005) The expression of selected non-ribosomal peptide synthetases in Aspergillus fumigatus is controlled by the availability of free iron. FEMS Microbiology Letters, 248 (1). pp. 83-91.

Renwick, Julie and Daly, Paul and Reeves, Emer and Kavanagh, Kevin (2006) Susceptibility of Larvae of Galleria mellonella to Infection by Asperillus fumigatus is Dependent upon Stage of Conidial Germination. Mycopathologia, 161. pp. 377-384.

Renwick, Julie and Reeves, Emer P. and Wientjes, Frans B. and Kavanagh, Kevin (2006) Translocation of proteins homologous to human neutrophil p47phox and p67phox to the cell membrane in activated hemocytes of Galleria mellonella. Developmental and Comparative Immunology.

Rolston, A.N. and Griffin, C.T. and Downes, M.J. (2006) Emergence and Dispersal Patterns of Two Isolates of the Entomopathogenic Nematode Steinernema feltiae. Journal of Nematology, 32 (2). pp. 221-228. ISSN 0022-300X

Rolston, Alec and Meade, Conor and Boyle, Stephen and Kakouli-Duarte, Thomae and Downes, Martin (2009) Intraspecific variation among isolates of the entomopathogenic nematode Steinernema feltiae from Bull Island, Ireland. Nematology, 11 (3). pp. 439-451. ISSN 1388-5545

Rolston, Alec N. and Griffin, Christine T. and Downes, Martin J. (2005) Distribution of entomopathogenic nematodes in an Irish sand dune system. Nematology, 7 (2). pp. 259-266.

Ryan, J.M. and Barry, F. and Murphy, J.M. and Mahon, B.P. (2007) Interferon-y does not break, but promotes the immunosuppressive capacity of adult human mesenchymal stem cells. Clinical and Experimental Immunology, 149. pp. 353-363.

Ryan, Jennifer M. and Barry, Frank P. and Murphy, J. Mary and Mahon, Bernard P. (2005) Mesenchymal stem cells avoid allogeneic rejection. Journal of Inflammation, 2 (1).

Rüdiger, S. and Shuai, J.W. and Huisinga, W. and Nagaiah, Ch. and Warnecke, G. and Parker, I. and Falcke, M. (2007) Hybrid stochastic and deterministic simulations of calcium blips. Biophysical Journal, 93 (6). pp. 1847-1857. ISSN 0006-3495

S

Santos, Tania (2011) Optimisation of phytase production by Aspergillus niger using solid state fermentation. Masters thesis, National University of Ireland Maynooth.

Schrettl, Markus and Carberry, Stephen and Kavanagh, Kevin and Haas, Hubertus and Jones, Gary W and O'Brien, Jennifer and Nolan, Aine and Stephens, John and Fenelon, Orla and Doyle, Sean (2010) Self-Protection against Gliotoxin—A Component of the Gliotoxin Biosynthetic Cluster, GliT, Completely Protects Aspergillus fumigatus Against Exogenous Gliotoxin. PLOS Pathogens, 6 (6). ISSN 1553-7366

Schroder, Martina (2010) Human DEAD-box protein 3 has multiple functions in gene regulation and cell cycle control and is a prime target for viral manipulation. Biochemical Pharmacology, 79 (3). pp. 297-306. ISSN 0006-2952,

Shannon, Adam J. and Browne, John A. and Boyd, Jacqueline and Fitzpatrick, David A. and Burnell, Ann M. (2005) The anhydrobiotic potential and molecular phylogenetics of species and strains of Panagrolaimus (Nematoda, Panagrolaimidae). Journal of Experimental Biology, 208. pp. 2433-2445.

Shen, M. and Guan, J. and Xu, L. and He, J. and Jones, G.W. and Song, Y. (2012) Steered molecular dynamics simulations on the binding of the appendant structure and helix-β2 in domain-swapped human cystatin C dimer. Journal of Biomolecular Structure and Dynamics. ISSN 0739-1102

Shevlin, Enda J. (2013) Investigations into novel signalling pathways in the response to viral and bacterial infections. PhD thesis, National University of Ireland Maynooth.

Shinoy, Minu and Dennehy, Ruth and Coleman, Elaine and Carberry, Stephen and Schaffer, Kirsten and Callaghan, Maire and Doyle, Sean and McClean, Siobhan (2013) Immunoproteomic Analysis of Proteins Expressed by Two Related Pathogens, Burkholderia multivorans and Burkholderia cenocepacia, during Human Infection. PLoS ONE, 8 (11). ISSN 1932-6203

Siednienko, Jackub and Gajanayake, Thusitha and Fitzgerald, Katherine A. and Moynagh, Paul N. and Miggin, Sinead M. (2011) Absence of MyD88 Results in Enhanced TLR3-Dependent Phosphorylation of IRF3 and Increased IFN-b and RANTES Production. Journal of Immunology, 186. pp. 2514-2511. ISSN 0022-1767

Siednienko, Jackub and Nowak, Joanna and Moynagh, Paul N. and Gorczyca, Wojciech A. (2011) Nitric oxide affects IL-6 expression in human peripheral blood mononuclear cells involving cGMP-dependent modulation of NF-jB activity. Cytokine, 54. pp. 282-288. ISSN 1043-4666

Siu Ting Salvatierra, Karen (2014) Novel approaches for large-scale phylogenetics and applications in the context of the amphibian tree of life. PhD thesis, National University of Ireland Maynooth.

Skerry, Ciaran M. and Mahon, Bernard P. (2010) A Live, Attenuated Bordetella pertussis Vaccine Provides Long-Term Protection against Virulent Challenge in a Murine Model. Clinical and Vaccine Immunology, 18 (2). pp. 187-193. ISSN 1556-6811

Smith, Alanna (2012) Synthesis and Characterisation of Silver(I)-Bioglues and Assessment of Biological Activity of AgNO3 Against Staphylococcus aureus. PhD thesis, National University of Ireland Maynooth.

Sperling, Erik A. and Peterson, Devin J. and Pisani, Davide (2009) Phylogenetic-Signal Dissection of Nuclear Housekeeping Genes Supports the Paraphyly of Sponges and the Monophyly of Eumetazoa. Molecular Biology and Evolution, 26 (10). pp. 2261-2274. ISSN 0737-4038

Stack, Colin M. and Easwaramoorthy, Subbana G. and Metha, Usha K. and Downes, Martin J. and Griffin, Christine T. and Burnell, Ann M. (2000) Molecular characterisation of Heterorhabditis indica isolates from India, Kenya, Indonesia and Cuba. Nematology, 2 (5). pp. 477-487.

Stack, Deirdre and Neville, Claire and Doyle, Sean (2007) Nonribosomal peptide synthesis in Aspergillus fumigatus and other fungi. Microbiology, 153 (5). pp. 1297-1306. ISSN 1465-2080

Staunton, Lisa (2011) Proteomic Profiling of Animal Models of Myotonia and Motor Neuron Disease. PhD thesis, National University of Ireland Maynooth.

Staunton, Lisa and O’Connell, Kathleen and Ohlendieck, Kay (2011) Proteomic Profiling of Mitochondrial Enzymes during Skeletal Muscle Aging. Journal of Aging Research (908035). pp. 1-9. ISSN 2090-2204

Stock, Patricia and Griffin, Christine T. and Burnell, Ann M. (2002) Morphological characterisation of three isolates of Heterorhabditis Poinar, 1976 from the "Irish group" (Nematoda: Rhabditida: Heterorhabditidae)and additional evidence supporting their recognition as a distinct species, H. downesi n. sp. Systematic Parasitology, 51. pp. 95-106.

Stock, S. Patricia and Griffin, Christine T. and Chaerani, Rani (2004) Morphological and molecular characterisation of Steinernema hermaphroditum n. sp. (Nematoda: Steinernematidae), an entomopathogenic nematode from Indonesia, and its phylogenetic relationships with other members of the genus. Nematology, 6. pp. 401-412.

Streif, Stefan and Findeisen, Rolf and Bullinger, Eric (2006) Relating cross Gramians and sensitivity analysis in systems biology. In: Proceedings of the 17th International Symposium on Mathematical Theory of Networks and Systems (MTNS 2006), July 24-28, 2006, Kyoto International Conference Hall, Kyoto, Japan.

Subramanian, Vijay G. and Duffy, Ken R. and Turner, Marian L. and Hodgkin, Philip D. (2008) Determining the expected variability of immune responses using the Cyton Model. Journal of Mathematical Biology, 56 (6). pp. 861-892. ISSN 1432-1416

T

Telgmann, Regina and von Kleist, Max and Huisinga, Wilhelm (2006) Software supported modelling in pharmacokinetics. In: Computational Life Sciences II: Second International Symposium, CompLife 2006, Cambridge, UK, September 27-29, 2006. Proceedings. Lecture Notes in Computer Science (LNCS), 4216/2006 . Springer Berlin / Heidelberg, pp. 216-225. ISBN 978-3-540-45767-1

Thati, Bhumika and Noble, Andy and Rowan, Raymond and Creaven, Bernadette S. and Walsh, Maureen and McCann, Malachy and Egan, Denise (2007) Mechanism of action of coumarin and silver(I)- coumarin complexes against the pathogenic yeast Candida albicans. Toxicology in Vitro.

Tobin, Laura M. (2012) Immune Mechanisms of Mesenchymal Stem Cell Therapy for Acute Graft versus Host Disease. PhD thesis, National University of Ireland Maynooth.

Travers, Simon A. A. and Clewley, Jonathan P. and Glynn, Judith R. and Fine, Paul E. M. and Crampin, Amelia C. and Sibande, Felix and Mulawa, Dominic and McInerney, James O. and McCormack, Grace P. (2004) Timing and Reconstruction of the Most Recent Common Ancestor of the Subtype C Clade of Human Immunodeficiency Virus Type 1. Journal of Virology, 78 (19). pp. 10501-10506.

Truman, Andrew W. and Kristjansdottir, Kolbrun and Wolfgeher, Donald and Hasin, Naushaba and Polier, Sigrun and Zhang, Hong and Perrett, Sarah and Prodromou, Chrisostomos and Jones, Gary W and Kron, Stephen J. (2012) CDK-Dependent Hsp70 Phosphorylation Controls G1 Cyclin Abundance and Cell-Cycle Progression. Cell, 151 (6). pp. 1308-1318. ISSN 0092-8674

V

Verwoerd, Mark and Mason, Oliver (2007) Conditions for the existence of fixed points in a finite system of Kuramoto oscillators. In: Proceedings of the 2007 American Control Conference, Marriott Marquis Hotel at Times Square, New York City, USA, July 11-13, 2007. IEEE, pp. 4613-4618. ISBN 1-4244-0988-8

Vickers, Imelda and Reeves, Emer P. and Kavanagh, Kevin A. and Doyle, Sean (2007) Isolation, activity and immunological characterisation of a secreted aspartic protease, CtsD, from Aspergillus fumigatus. Protein Expression and Purification, 53. pp. 216-224. ISSN 1046-5928

Vicuna, Deborah and Malone, Renee P. and Dix, Philip J. (2011) Increased Tolerance to Abiotic Stresses in Tobacco Plants Expressing a Barley Cell Wall Peroxidase. Journal of Plant Sciences, 6 (1). pp. 1-13. ISSN 1816-4951

van der Bekerom, Rob Jozef Matheus (2010) An Investigation into Transformation and RNA Editing in the Lolium Plastome. PhD thesis, National University of Ireland Maynooth.

von Kleist, Max and Huisinga, Wilhelm (2009) Pharmacokinetic-Pharmacodynamic relationship of NRTIs and its connection to viral escape: An example based on Zidovudine. European Journal of Pharmaceutical Sciences, 36 (4-5). pp. 535-543. ISSN 0928-0987

von Kleist, Max and Huisinga, Wilhelm (2007) Physiologically Based Pharmacokinetic Modelling: A Sub-Compartmentalized Model of Tissue Distribution. Journal of Pharmacokinetics and Pharmacodynamics, 34 (6). pp. 789-806. ISSN 1573-8744

W

Walsh, Fiona and Duffy, Brion (2013) The Culturable Soil Antibiotic Resistome: A Community of Multi-Drug Resistant Bacteria. PLoS ONE. ISSN 1932-6203

Walsh, Fiona and Smith, Daniel P. and Owens, Sarah M. and Duffy, Brion and Frey, Jurg E. (2014) Restricted streptomycin use in apple orchards did not adversely alter the soil bacteria communities. Frontiers in Microbiology. ISSN 1664-302X

Wang, Yulang and Carolan, James C. and Hao, FuHua and Nicholson, Jeremy K. and Wilkinson, Thomas L. and Douglas, Angela E. (2010) Integrated Metabonomic-Proteomic Analysis of an Insect-Bacterial Symbiotic System. Journal of Proteome Research, 9 (3). pp. 1257-1267. ISSN 1535-3893

Wang, Bingwei (2011) Investigating the Role of Pellin03 in TNF Signalling. PhD thesis, National University of Ireland Maynooth.

Waters, Sinead M. and Doyle, Sean and Murphy, Richard A. and Power, Ronan F.G. (2005) Development of solution phase hybridisation PCR-ELISA for the detection and quantification of Enterococcus faecalis and Pediococcus pentosaceus in Nurmi-type cultures. Journal of Microbiological Methods, 63. pp. 264-275. ISSN 0167-7012

Wilkinson, Mark and Thorley, Joseph L. and Pisani, David E. and Lapointe, Francois-Joseph and McInerney, James O. (2004) Some Desiderata for Liberal Supertrees. In: UNSPECIFIED Kluwer Academic Publishers, p. 564.

Williams, Paul H. and An, Jiandong and Brown, Mark J. F. and Carolan, James C. and Goulson, Dave and Huang, Jiaxing and Ito, Masao (2012) Cryptic Bumblebee Species: Consequences for Conservation and the Trade in Greenhouse Pollinators. PLoS ONE, 7 (3). e32992. ISSN 1932-6203

X

Xu, Linan and Hasin, Naushaba and Shen, Manli and He, Jianwei and Xue, Youlin and Zhou, Xiaohong and Perrett, Sarah and Song, Youtao and Jones, Gary W (2013) Using Steered Molecular Dynamics to Predict and Assess Hsp70 Substrate-Binding Domain Mutants that Alter Prion Propagation. PLoS Computational Biology, 9 (1). ISSN 1553-734X

Y

Yang, Shuo and Wang, Bingwei and Humphries, Fiachra and Jackson, Ruaidhri and Healy, Mark and Bergin, Ronan and Aviello, Gabriella and Hall, Barry and McNamara, Deirdre and Darby, Trevor and Quinlan, Aoife and Shanahan, Fergus and Melgar, Silvia and Fallon, Padraic G. and Moynagh, Paul N. (2013) Pellino3 ubiquitinates RIP2 and mediates Nod2-induced signaling and protective effects in colitis. Nature Immunology, 14 (9). pp. 927-936. ISSN 1529-2908

Young, Pamela A. (2013) The effect of Retinol Binding Protein on the Proteome of muscle cells. PhD thesis, National University of Ireland Maynooth.

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